Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
COL18A1P39060 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC23.65■■□□□ 1.38
COL18A1P39060 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC23.65■■□□□ 1.38
COL18A1P39060 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
COL18A1P39060 AL049757.1-201ENST00000616842 1596 ntBASIC23.64■■□□□ 1.38
COL18A1P39060 PHGDH-209ENST00000641074 1780 ntBASIC23.64■■□□□ 1.38
COL18A1P39060 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.37
COL18A1P39060 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC23.64■■□□□ 1.37
COL18A1P39060 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC23.64■■□□□ 1.37
COL18A1P39060 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
COL18A1P39060 GID4-202ENST00000376345 1391 ntTSL 3 BASIC23.64■■□□□ 1.37
COL18A1P39060 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC23.64■■□□□ 1.37
COL18A1P39060 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
COL18A1P39060 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
COL18A1P39060 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.37
COL18A1P39060 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC23.64■■□□□ 1.37
COL18A1P39060 PNMT-202ENST00000394246 821 ntTSL 2 BASIC23.63■■□□□ 1.37
COL18A1P39060 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC23.63■■□□□ 1.37
COL18A1P39060 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC23.63■■□□□ 1.37
COL18A1P39060 ORC5-208ENST00000626700 344 ntTSL 3 BASIC23.63■■□□□ 1.37
COL18A1P39060 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC23.63■■□□□ 1.37
COL18A1P39060 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC23.63■■□□□ 1.37
COL18A1P39060 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
COL18A1P39060 SP100-208ENST00000427101 1922 ntTSL 2 BASIC23.63■■□□□ 1.37
COL18A1P39060 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC23.63■■□□□ 1.37
COL18A1P39060 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
COL18A1P39060 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC23.63■■□□□ 1.37
COL18A1P39060 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC23.63■■□□□ 1.37
COL18A1P39060 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
COL18A1P39060 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
COL18A1P39060 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
COL18A1P39060 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
COL18A1P39060 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
COL18A1P39060 ADH5P3-201ENST00000433842 1137 ntBASIC23.63■■□□□ 1.37
COL18A1P39060 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC23.63■■□□□ 1.37
COL18A1P39060 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC23.63■■□□□ 1.37
COL18A1P39060 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC23.63■■□□□ 1.37
COL18A1P39060 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC23.63■■□□□ 1.37
COL18A1P39060 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC23.63■■□□□ 1.37
COL18A1P39060 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC23.62■■□□□ 1.37
COL18A1P39060 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
COL18A1P39060 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
COL18A1P39060 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC23.62■■□□□ 1.37
COL18A1P39060 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
COL18A1P39060 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC23.62■■□□□ 1.37
COL18A1P39060 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC23.62■■□□□ 1.37
COL18A1P39060 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC23.62■■□□□ 1.37
COL18A1P39060 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC23.62■■□□□ 1.37
COL18A1P39060 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
COL18A1P39060 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC23.61■■□□□ 1.37
COL18A1P39060 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
COL18A1P39060 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
COL18A1P39060 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC23.61■■□□□ 1.37
COL18A1P39060 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC23.61■■□□□ 1.37
COL18A1P39060 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
COL18A1P39060 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC23.61■■□□□ 1.37
COL18A1P39060 MAL2-202ENST00000531508 892 ntTSL 3 BASIC23.61■■□□□ 1.37
COL18A1P39060 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC23.61■■□□□ 1.37
COL18A1P39060 AL031432.2-201ENST00000566714 459 ntBASIC23.61■■□□□ 1.37
COL18A1P39060 AL928711.1-201ENST00000570165 459 ntBASIC23.61■■□□□ 1.37
COL18A1P39060 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC23.61■■□□□ 1.37
COL18A1P39060 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC23.61■■□□□ 1.37
COL18A1P39060 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC23.61■■□□□ 1.37
COL18A1P39060 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC23.61■■□□□ 1.37
COL18A1P39060 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
COL18A1P39060 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC23.61■■□□□ 1.37
COL18A1P39060 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
COL18A1P39060 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
COL18A1P39060 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
COL18A1P39060 AL031598.1-201ENST00000561511 1773 ntBASIC23.61■■□□□ 1.37
COL18A1P39060 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC23.6■■□□□ 1.37
COL18A1P39060 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC23.6■■□□□ 1.37
COL18A1P39060 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC23.6■■□□□ 1.37
COL18A1P39060 SPCS2P1-201ENST00000561636 679 ntBASIC23.6■■□□□ 1.37
COL18A1P39060 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC23.6■■□□□ 1.37
COL18A1P39060 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
COL18A1P39060 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
COL18A1P39060 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
COL18A1P39060 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
COL18A1P39060 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC23.6■■□□□ 1.37
COL18A1P39060 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC23.6■■□□□ 1.37
COL18A1P39060 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
COL18A1P39060 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
COL18A1P39060 CD82-202ENST00000342935 967 ntTSL 5 BASIC23.6■■□□□ 1.37
COL18A1P39060 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
COL18A1P39060 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC23.6■■□□□ 1.37
COL18A1P39060 AP000344.2-201ENST00000512987 629 ntBASIC23.6■■□□□ 1.37
COL18A1P39060 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC23.6■■□□□ 1.37
COL18A1P39060 MIR3197-201ENST00000582241 73 ntBASIC23.6■■□□□ 1.37
COL18A1P39060 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC23.6■■□□□ 1.37
COL18A1P39060 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC23.6■■□□□ 1.37
COL18A1P39060 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC23.6■■□□□ 1.37
COL18A1P39060 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC23.6■■□□□ 1.37
COL18A1P39060 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC23.6■■□□□ 1.37
COL18A1P39060 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
COL18A1P39060 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC23.59■■□□□ 1.37
COL18A1P39060 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
COL18A1P39060 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
COL18A1P39060 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC23.59■■□□□ 1.37
COL18A1P39060 VN2R19P-201ENST00000442399 1052 ntBASIC23.59■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms