Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.11■□□□□ 0.33
RORAP35398 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RORAP35398 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RORAP35398 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
RORAP35398 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RORAP35398 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
RORAP35398 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
RORAP35398 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RORAP35398 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RORAP35398 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RORAP35398 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RORAP35398 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RORAP35398 AKR1C7P-201ENST00000305623 895 ntBASIC17.11■□□□□ 0.33
RORAP35398 CCS-201ENST00000310190 942 ntTSL 5 BASIC17.11■□□□□ 0.33
RORAP35398 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
RORAP35398 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RORAP35398 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RORAP35398 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC17.11■□□□□ 0.33
RORAP35398 AL160237.2-201ENST00000556165 472 ntBASIC17.11■□□□□ 0.33
RORAP35398 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
RORAP35398 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RORAP35398 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RORAP35398 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
RORAP35398 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC17.11■□□□□ 0.33
RORAP35398 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC17.11■□□□□ 0.33
RORAP35398 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC17.11■□□□□ 0.33
RORAP35398 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RORAP35398 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
RORAP35398 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RORAP35398 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
RORAP35398 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RORAP35398 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RORAP35398 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
RORAP35398 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RORAP35398 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RORAP35398 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RORAP35398 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RORAP35398 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RORAP35398 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RORAP35398 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.1■□□□□ 0.33
RORAP35398 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC17.1■□□□□ 0.33
RORAP35398 AC009078.2-202ENST00000463353 338 ntBASIC17.1■□□□□ 0.33
RORAP35398 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.1■□□□□ 0.33
RORAP35398 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC17.1■□□□□ 0.33
RORAP35398 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
RORAP35398 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC17.1■□□□□ 0.33
RORAP35398 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RORAP35398 AC005336.2-201ENST00000593183 939 ntBASIC17.1■□□□□ 0.33
RORAP35398 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC17.1■□□□□ 0.33
RORAP35398 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RORAP35398 AC005082.1-201ENST00000413042 2259 ntBASIC17.1■□□□□ 0.33
RORAP35398 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RORAP35398 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RORAP35398 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RORAP35398 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RORAP35398 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RORAP35398 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RORAP35398 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
RORAP35398 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RORAP35398 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RORAP35398 LINC00602-201ENST00000629776 2065 ntBASIC17.09■□□□□ 0.33
RORAP35398 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC17.09■□□□□ 0.33
RORAP35398 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
RORAP35398 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RORAP35398 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
RORAP35398 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
RORAP35398 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
RORAP35398 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RORAP35398 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RORAP35398 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RORAP35398 LSM5-204ENST00000409909 740 ntTSL 2 BASIC17.09■□□□□ 0.33
RORAP35398 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
RORAP35398 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC17.09■□□□□ 0.33
RORAP35398 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC17.09■□□□□ 0.33
RORAP35398 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RORAP35398 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC17.09■□□□□ 0.33
RORAP35398 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RORAP35398 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC17.09■□□□□ 0.33
RORAP35398 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RORAP35398 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
RORAP35398 AL121912.1-201ENST00000603683 238 ntBASIC17.09■□□□□ 0.33
RORAP35398 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC17.09■□□□□ 0.33
RORAP35398 REXO1L6P-202ENST00000619970 1078 ntBASIC17.09■□□□□ 0.33
RORAP35398 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RORAP35398 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC17.09■□□□□ 0.33
RORAP35398 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
RORAP35398 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RORAP35398 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RORAP35398 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RORAP35398 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RORAP35398 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.09■□□□□ 0.33
RORAP35398 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
RORAP35398 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RORAP35398 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC17.09■□□□□ 0.33
RORAP35398 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RORAP35398 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RORAP35398 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
RORAP35398 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RORAP35398 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RORAP35398 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms