Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC18.12■□□□□ 0.49
PTPN4P29074 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC18.12■□□□□ 0.49
PTPN4P29074 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC18.12■□□□□ 0.49
PTPN4P29074 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTPN4P29074 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTPN4P29074 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC18.12■□□□□ 0.49
PTPN4P29074 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC18.12■□□□□ 0.49
PTPN4P29074 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC18.12■□□□□ 0.49
PTPN4P29074 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTPN4P29074 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC18.12■□□□□ 0.49
PTPN4P29074 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC18.12■□□□□ 0.49
PTPN4P29074 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC18.12■□□□□ 0.49
PTPN4P29074 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC18.12■□□□□ 0.49
PTPN4P29074 AL023803.3-201ENST00000615559 522 ntBASIC18.12■□□□□ 0.49
PTPN4P29074 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
PTPN4P29074 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC18.12■□□□□ 0.49
PTPN4P29074 PP12613-201ENST00000424958 2230 ntBASIC18.12■□□□□ 0.49
PTPN4P29074 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTPN4P29074 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTPN4P29074 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PTPN4P29074 AC092338.2-201ENST00000568827 1415 ntBASIC18.12■□□□□ 0.49
PTPN4P29074 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PTPN4P29074 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
PTPN4P29074 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.12■□□□□ 0.49
PTPN4P29074 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC18.12■□□□□ 0.49
PTPN4P29074 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC18.12■□□□□ 0.49
PTPN4P29074 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTPN4P29074 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
PTPN4P29074 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN4P29074 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN4P29074 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN4P29074 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN4P29074 NKILA-202ENST00000614771 2598 ntBASIC18.11■□□□□ 0.49
PTPN4P29074 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN4P29074 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC18.11■□□□□ 0.49
PTPN4P29074 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
PTPN4P29074 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC18.11■□□□□ 0.49
PTPN4P29074 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN4P29074 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN4P29074 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN4P29074 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
PTPN4P29074 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN4P29074 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN4P29074 AC117947.1-201ENST00000427448 529 ntBASIC18.11■□□□□ 0.49
PTPN4P29074 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
PTPN4P29074 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN4P29074 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC18.11■□□□□ 0.49
PTPN4P29074 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC18.11■□□□□ 0.49
PTPN4P29074 AC063952.2-201ENST00000498792 1227 ntBASIC18.11■□□□□ 0.49
PTPN4P29074 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
PTPN4P29074 AC022616.7-201ENST00000525383 220 ntBASIC18.11■□□□□ 0.49
PTPN4P29074 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC18.11■□□□□ 0.49
PTPN4P29074 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC18.11■□□□□ 0.49
PTPN4P29074 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.11■□□□□ 0.49
PTPN4P29074 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN4P29074 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
PTPN4P29074 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN4P29074 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN4P29074 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.11■□□□□ 0.49
PTPN4P29074 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
PTPN4P29074 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN4P29074 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN4P29074 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN4P29074 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN4P29074 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN4P29074 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC18.1■□□□□ 0.49
PTPN4P29074 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
PTPN4P29074 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTPN4P29074 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTPN4P29074 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTPN4P29074 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PTPN4P29074 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTPN4P29074 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTPN4P29074 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTPN4P29074 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
PTPN4P29074 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PTPN4P29074 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PTPN4P29074 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18.1■□□□□ 0.49
PTPN4P29074 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTPN4P29074 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTPN4P29074 FLJ13224-201ENST00000313737 1514 ntBASIC18.1■□□□□ 0.49
PTPN4P29074 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
PTPN4P29074 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC18.1■□□□□ 0.49
PTPN4P29074 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTPN4P29074 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTPN4P29074 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTPN4P29074 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTPN4P29074 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
PTPN4P29074 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC18.1■□□□□ 0.49
PTPN4P29074 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC18.1■□□□□ 0.49
PTPN4P29074 AL353719.1-201ENST00000566847 864 ntBASIC18.1■□□□□ 0.49
PTPN4P29074 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC18.1■□□□□ 0.49
PTPN4P29074 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTPN4P29074 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTPN4P29074 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTPN4P29074 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC18.1■□□□□ 0.49
PTPN4P29074 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTPN4P29074 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC18.1■□□□□ 0.49
PTPN4P29074 AC022211.2-201ENST00000585075 2527 ntBASIC18.1■□□□□ 0.49
PTPN4P29074 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 83.3 ms