Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
COL5A1P20908 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
COL5A1P20908 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL5A1P20908 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL5A1P20908 LBH-203ENST00000404397 543 ntTSL 4 BASIC17.2■□□□□ 0.34
COL5A1P20908 ELK2BP-201ENST00000415014 1224 ntBASIC17.2■□□□□ 0.34
COL5A1P20908 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC17.2■□□□□ 0.34
COL5A1P20908 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC17.2■□□□□ 0.34
COL5A1P20908 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.2■□□□□ 0.34
COL5A1P20908 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
COL5A1P20908 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC17.2■□□□□ 0.34
COL5A1P20908 AC098818.2-201ENST00000564925 2320 ntBASIC17.2■□□□□ 0.34
COL5A1P20908 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC17.2■□□□□ 0.34
COL5A1P20908 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC17.2■□□□□ 0.34
COL5A1P20908 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
COL5A1P20908 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.2■□□□□ 0.34
COL5A1P20908 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL5A1P20908 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL5A1P20908 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL5A1P20908 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC17.19■□□□□ 0.34
COL5A1P20908 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC17.19■□□□□ 0.34
COL5A1P20908 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC17.19■□□□□ 0.34
COL5A1P20908 AC108073.2-201ENST00000464002 357 ntBASIC17.19■□□□□ 0.34
COL5A1P20908 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC17.19■□□□□ 0.34
COL5A1P20908 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
COL5A1P20908 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
COL5A1P20908 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL5A1P20908 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL5A1P20908 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL5A1P20908 ADM-208ENST00000534464 1640 ntTSL 2 BASIC17.19■□□□□ 0.34
COL5A1P20908 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC17.19■□□□□ 0.34
COL5A1P20908 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.19■□□□□ 0.34
COL5A1P20908 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL5A1P20908 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC17.19■□□□□ 0.34
COL5A1P20908 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL5A1P20908 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
COL5A1P20908 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL5A1P20908 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
COL5A1P20908 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL5A1P20908 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL5A1P20908 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL5A1P20908 SPDYE21P-201ENST00000413323 827 ntBASIC17.19■□□□□ 0.34
COL5A1P20908 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC17.19■□□□□ 0.34
COL5A1P20908 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.34
COL5A1P20908 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC17.19■□□□□ 0.34
COL5A1P20908 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC17.19■□□□□ 0.34
COL5A1P20908 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC17.19■□□□□ 0.34
COL5A1P20908 TBC1D3P5-201ENST00000579401 1545 ntBASIC17.18■□□□□ 0.34
COL5A1P20908 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL5A1P20908 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
COL5A1P20908 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
COL5A1P20908 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.18■□□□□ 0.34
COL5A1P20908 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL5A1P20908 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC17.18■□□□□ 0.34
COL5A1P20908 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL5A1P20908 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL5A1P20908 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC17.18■□□□□ 0.34
COL5A1P20908 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC17.18■□□□□ 0.34
COL5A1P20908 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC17.18■□□□□ 0.34
COL5A1P20908 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC17.18■□□□□ 0.34
COL5A1P20908 AC005593.1-201ENST00000624894 515 ntBASIC17.18■□□□□ 0.34
COL5A1P20908 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL5A1P20908 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC17.18■□□□□ 0.34
COL5A1P20908 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL5A1P20908 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL5A1P20908 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL5A1P20908 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
COL5A1P20908 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL5A1P20908 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL5A1P20908 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.17■□□□□ 0.34
COL5A1P20908 AL353593.2-201ENST00000602529 1483 ntBASIC17.17■□□□□ 0.34
COL5A1P20908 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL5A1P20908 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC17.17■□□□□ 0.34
COL5A1P20908 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC17.17■□□□□ 0.34
COL5A1P20908 CRYGEP-201ENST00000412192 528 ntBASIC17.17■□□□□ 0.34
COL5A1P20908 AC103564.2-201ENST00000432853 1299 ntBASIC17.17■□□□□ 0.34
COL5A1P20908 ARTN-206ENST00000472435 402 ntTSL 3 BASIC17.17■□□□□ 0.34
COL5A1P20908 CFL1-202ENST00000524553 860 ntTSL 2 BASIC17.17■□□□□ 0.34
COL5A1P20908 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL5A1P20908 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL5A1P20908 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL5A1P20908 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL5A1P20908 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.17■□□□□ 0.34
COL5A1P20908 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL5A1P20908 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL5A1P20908 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
COL5A1P20908 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL5A1P20908 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL5A1P20908 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL5A1P20908 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL5A1P20908 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC17.17■□□□□ 0.34
COL5A1P20908 SLC4A1APP2-201ENST00000424054 1259 ntBASIC17.17■□□□□ 0.34
COL5A1P20908 MKNK2P1-201ENST00000437526 628 ntBASIC17.17■□□□□ 0.34
COL5A1P20908 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL5A1P20908 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC17.17■□□□□ 0.34
COL5A1P20908 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC17.17■□□□□ 0.34
COL5A1P20908 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC17.17■□□□□ 0.34
COL5A1P20908 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC17.17■□□□□ 0.34
COL5A1P20908 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC17.17■□□□□ 0.34
COL5A1P20908 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC17.17■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms