Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC18.65■□□□□ 0.58
HMGA1P17096 AL671883.3-201ENST00000603274 991 ntBASIC18.65■□□□□ 0.58
HMGA1P17096 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
HMGA1P17096 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGA1P17096 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGA1P17096 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC18.65■□□□□ 0.58
HMGA1P17096 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC18.65■□□□□ 0.58
HMGA1P17096 AL356309.3-201ENST00000624132 1934 ntBASIC18.64■□□□□ 0.58
HMGA1P17096 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC18.64■□□□□ 0.58
HMGA1P17096 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
HMGA1P17096 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
HMGA1P17096 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC18.64■□□□□ 0.58
HMGA1P17096 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18.64■□□□□ 0.57
HMGA1P17096 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
HMGA1P17096 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
HMGA1P17096 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGA1P17096 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGA1P17096 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HMGA1P17096 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC18.64■□□□□ 0.57
HMGA1P17096 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC18.64■□□□□ 0.57
HMGA1P17096 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
HMGA1P17096 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC18.64■□□□□ 0.57
HMGA1P17096 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HMGA1P17096 AC122714.2-201ENST00000502787 707 ntBASIC18.64■□□□□ 0.57
HMGA1P17096 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC18.64■□□□□ 0.57
HMGA1P17096 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC18.64■□□□□ 0.57
HMGA1P17096 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
HMGA1P17096 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC18.64■□□□□ 0.57
HMGA1P17096 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC18.64■□□□□ 0.57
HMGA1P17096 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC18.64■□□□□ 0.57
HMGA1P17096 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
HMGA1P17096 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HMGA1P17096 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC18.64■□□□□ 0.57
HMGA1P17096 ABBA01031661.1-201ENST00000634362 1253 ntBASIC18.64■□□□□ 0.57
HMGA1P17096 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HMGA1P17096 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HMGA1P17096 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC18.64■□□□□ 0.57
HMGA1P17096 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC18.64■□□□□ 0.57
HMGA1P17096 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC18.64■□□□□ 0.57
HMGA1P17096 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
HMGA1P17096 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HMGA1P17096 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HMGA1P17096 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
HMGA1P17096 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGA1P17096 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC18.63■□□□□ 0.57
HMGA1P17096 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HMGA1P17096 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
HMGA1P17096 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC18.63■□□□□ 0.57
HMGA1P17096 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGA1P17096 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC18.63■□□□□ 0.57
HMGA1P17096 SLC25A1P1-201ENST00000528351 927 ntBASIC18.63■□□□□ 0.57
HMGA1P17096 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGA1P17096 NKAPP1-205ENST00000585790 367 ntBASIC18.63■□□□□ 0.57
HMGA1P17096 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGA1P17096 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC18.63■□□□□ 0.57
HMGA1P17096 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
HMGA1P17096 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGA1P17096 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC18.63■□□□□ 0.57
HMGA1P17096 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGA1P17096 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGA1P17096 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGA1P17096 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGA1P17096 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC18.63■□□□□ 0.57
HMGA1P17096 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGA1P17096 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC18.62■□□□□ 0.57
HMGA1P17096 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGA1P17096 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC18.62■□□□□ 0.57
HMGA1P17096 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC18.62■□□□□ 0.57
HMGA1P17096 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGA1P17096 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC18.62■□□□□ 0.57
HMGA1P17096 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
HMGA1P17096 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGA1P17096 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC18.62■□□□□ 0.57
HMGA1P17096 SRP19-202ENST00000445150 833 ntTSL 2 BASIC18.62■□□□□ 0.57
HMGA1P17096 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC18.62■□□□□ 0.57
HMGA1P17096 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC18.62■□□□□ 0.57
HMGA1P17096 AF228730.7-201ENST00000641842 219 ntBASIC18.62■□□□□ 0.57
HMGA1P17096 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
HMGA1P17096 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGA1P17096 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGA1P17096 PMPCAP1-201ENST00000508114 1576 ntBASIC18.62■□□□□ 0.57
HMGA1P17096 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HMGA1P17096 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HMGA1P17096 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HMGA1P17096 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGA1P17096 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HMGA1P17096 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC18.62■□□□□ 0.57
HMGA1P17096 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
HMGA1P17096 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC18.61■□□□□ 0.57
HMGA1P17096 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
HMGA1P17096 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.61■□□□□ 0.57
HMGA1P17096 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC18.61■□□□□ 0.57
HMGA1P17096 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGA1P17096 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HMGA1P17096 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGA1P17096 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGA1P17096 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGA1P17096 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
HMGA1P17096 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGA1P17096 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms