Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
CTDNEP1O95476 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
CTDNEP1O95476 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC20.89■□□□□ 0.93
CTDNEP1O95476 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CTDNEP1O95476 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC20.88■□□□□ 0.93
CTDNEP1O95476 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
CTDNEP1O95476 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
CTDNEP1O95476 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
CTDNEP1O95476 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CTDNEP1O95476 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CTDNEP1O95476 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CTDNEP1O95476 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CTDNEP1O95476 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
CTDNEP1O95476 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CTDNEP1O95476 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC20.88■□□□□ 0.93
CTDNEP1O95476 AP003733.1-201ENST00000491725 852 ntBASIC20.88■□□□□ 0.93
CTDNEP1O95476 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC20.88■□□□□ 0.93
CTDNEP1O95476 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CTDNEP1O95476 PPOX-214ENST00000535223 664 ntTSL 3 BASIC20.88■□□□□ 0.93
CTDNEP1O95476 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CTDNEP1O95476 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC20.88■□□□□ 0.93
CTDNEP1O95476 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC20.88■□□□□ 0.93
CTDNEP1O95476 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC20.88■□□□□ 0.93
CTDNEP1O95476 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC20.88■□□□□ 0.93
CTDNEP1O95476 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CTDNEP1O95476 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
CTDNEP1O95476 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CTDNEP1O95476 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
CTDNEP1O95476 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC20.88■□□□□ 0.93
CTDNEP1O95476 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
CTDNEP1O95476 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CTDNEP1O95476 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
CTDNEP1O95476 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CTDNEP1O95476 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CTDNEP1O95476 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CTDNEP1O95476 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CTDNEP1O95476 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC20.87■□□□□ 0.93
CTDNEP1O95476 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CTDNEP1O95476 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CTDNEP1O95476 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
CTDNEP1O95476 TMPOP1-202ENST00000424642 1267 ntBASIC20.87■□□□□ 0.93
CTDNEP1O95476 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC20.87■□□□□ 0.93
CTDNEP1O95476 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC20.87■□□□□ 0.93
CTDNEP1O95476 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CTDNEP1O95476 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC20.87■□□□□ 0.93
CTDNEP1O95476 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CTDNEP1O95476 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC20.87■□□□□ 0.93
CTDNEP1O95476 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CTDNEP1O95476 AL353692.3-201ENST00000407031 1396 ntBASIC20.86■□□□□ 0.93
CTDNEP1O95476 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
CTDNEP1O95476 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CTDNEP1O95476 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CTDNEP1O95476 AC022898.2-201ENST00000616822 1312 ntBASIC20.86■□□□□ 0.93
CTDNEP1O95476 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC20.86■□□□□ 0.93
CTDNEP1O95476 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CTDNEP1O95476 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CTDNEP1O95476 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CTDNEP1O95476 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC20.86■□□□□ 0.93
CTDNEP1O95476 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CTDNEP1O95476 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
CTDNEP1O95476 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC20.86■□□□□ 0.93
CTDNEP1O95476 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC20.86■□□□□ 0.93
CTDNEP1O95476 AC005332.3-201ENST00000589904 676 ntBASIC20.86■□□□□ 0.93
CTDNEP1O95476 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CTDNEP1O95476 AL390719.2-201ENST00000606993 987 ntBASIC20.86■□□□□ 0.93
CTDNEP1O95476 GXYLT1P4-201ENST00000613576 1192 ntBASIC20.86■□□□□ 0.93
CTDNEP1O95476 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC20.86■□□□□ 0.93
CTDNEP1O95476 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CTDNEP1O95476 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CTDNEP1O95476 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CTDNEP1O95476 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CTDNEP1O95476 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CTDNEP1O95476 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC20.86■□□□□ 0.93
CTDNEP1O95476 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC20.85■□□□□ 0.93
CTDNEP1O95476 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CTDNEP1O95476 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CTDNEP1O95476 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CTDNEP1O95476 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CTDNEP1O95476 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CTDNEP1O95476 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC20.85■□□□□ 0.93
CTDNEP1O95476 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
CTDNEP1O95476 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC20.85■□□□□ 0.93
CTDNEP1O95476 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CTDNEP1O95476 REXO1L11P-201ENST00000620964 1927 ntBASIC20.85■□□□□ 0.93
CTDNEP1O95476 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CTDNEP1O95476 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CTDNEP1O95476 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CTDNEP1O95476 AC092647.4-201ENST00000457211 535 ntBASIC20.85■□□□□ 0.93
CTDNEP1O95476 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC20.85■□□□□ 0.93
CTDNEP1O95476 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC20.85■□□□□ 0.93
CTDNEP1O95476 ZNF444P1-201ENST00000559497 298 ntBASIC20.85■□□□□ 0.93
CTDNEP1O95476 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC20.85■□□□□ 0.93
CTDNEP1O95476 AC009154.2-201ENST00000621177 724 ntBASIC20.85■□□□□ 0.93
CTDNEP1O95476 AC139713.2-201ENST00000641328 2723 ntBASIC20.85■□□□□ 0.93
CTDNEP1O95476 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CTDNEP1O95476 AL645608.8-201ENST00000606034 2086 ntBASIC20.85■□□□□ 0.93
CTDNEP1O95476 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CTDNEP1O95476 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
CTDNEP1O95476 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CTDNEP1O95476 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms