Protein–RNA interactions for Protein: O94913

PCF11, Pre-mRNA cleavage complex 2 protein Pcf11, humanhuman

Known RBP Predictions only

Length 1,555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11O94913 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
PCF11O94913 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
PCF11O94913 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC27.94■■■□□ 2.06
PCF11O94913 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
PCF11O94913 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC27.94■■■□□ 2.06
PCF11O94913 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
PCF11O94913 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC27.94■■■□□ 2.06
PCF11O94913 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC27.94■■■□□ 2.06
PCF11O94913 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC27.94■■■□□ 2.06
PCF11O94913 RNA5SP415-201ENST00000517246 115 ntBASIC27.94■■■□□ 2.06
PCF11O94913 DUTP2-201ENST00000519164 463 ntBASIC27.94■■■□□ 2.06
PCF11O94913 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC27.94■■■□□ 2.06
PCF11O94913 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC27.94■■■□□ 2.06
PCF11O94913 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
PCF11O94913 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
PCF11O94913 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC27.94■■■□□ 2.06
PCF11O94913 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
PCF11O94913 USP49-202ENST00000373010 2446 ntTSL 5 BASIC27.93■■■□□ 2.06
PCF11O94913 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC27.93■■■□□ 2.06
PCF11O94913 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
PCF11O94913 AP000974.1-201ENST00000623909 2387 ntBASIC27.93■■■□□ 2.06
PCF11O94913 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
PCF11O94913 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
PCF11O94913 MIR940-201ENST00000401276 94 ntBASIC27.93■■■□□ 2.06
PCF11O94913 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC27.93■■■□□ 2.06
PCF11O94913 HTR5BP-201ENST00000430851 1154 ntBASIC27.93■■■□□ 2.06
PCF11O94913 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC27.93■■■□□ 2.06
PCF11O94913 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC27.93■■■□□ 2.06
PCF11O94913 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC27.93■■■□□ 2.06
PCF11O94913 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
PCF11O94913 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC27.93■■■□□ 2.06
PCF11O94913 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC27.93■■■□□ 2.06
PCF11O94913 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC27.92■■■□□ 2.06
PCF11O94913 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC27.92■■■□□ 2.06
PCF11O94913 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC27.92■■■□□ 2.06
PCF11O94913 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC27.92■■■□□ 2.06
PCF11O94913 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC27.92■■■□□ 2.06
PCF11O94913 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC27.92■■■□□ 2.06
PCF11O94913 RPSAP43-201ENST00000402237 625 ntBASIC27.92■■■□□ 2.06
PCF11O94913 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
PCF11O94913 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
PCF11O94913 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC27.92■■■□□ 2.06
PCF11O94913 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
PCF11O94913 AC239800.4-201ENST00000603712 296 ntBASIC27.92■■■□□ 2.06
PCF11O94913 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
PCF11O94913 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
PCF11O94913 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
PCF11O94913 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC27.92■■■□□ 2.06
PCF11O94913 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
PCF11O94913 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC27.91■■■□□ 2.06
PCF11O94913 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC27.91■■■□□ 2.06
PCF11O94913 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC27.91■■■□□ 2.06
PCF11O94913 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC27.91■■■□□ 2.06
PCF11O94913 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC27.91■■■□□ 2.06
PCF11O94913 SRP19-202ENST00000445150 833 ntTSL 2 BASIC27.91■■■□□ 2.06
PCF11O94913 NMU-202ENST00000505262 693 ntTSL 3 BASIC27.91■■■□□ 2.06
PCF11O94913 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC27.91■■■□□ 2.06
PCF11O94913 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC27.91■■■□□ 2.06
PCF11O94913 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
PCF11O94913 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC27.91■■■□□ 2.06
PCF11O94913 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC27.91■■■□□ 2.06
PCF11O94913 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC27.91■■■□□ 2.06
PCF11O94913 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC27.91■■■□□ 2.06
PCF11O94913 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC27.91■■■□□ 2.06
PCF11O94913 FLYWCH1P1-201ENST00000460917 1874 ntBASIC27.91■■■□□ 2.06
PCF11O94913 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC27.91■■■□□ 2.06
PCF11O94913 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC27.91■■■□□ 2.06
PCF11O94913 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
PCF11O94913 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
PCF11O94913 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC27.91■■■□□ 2.06
PCF11O94913 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC27.91■■■□□ 2.06
PCF11O94913 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
PCF11O94913 AC004967.1-201ENST00000453589 447 ntBASIC27.9■■■□□ 2.06
PCF11O94913 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC27.9■■■□□ 2.06
PCF11O94913 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC27.9■■■□□ 2.06
PCF11O94913 AL356488.2-201ENST00000602755 427 ntBASIC27.9■■■□□ 2.06
PCF11O94913 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC27.9■■■□□ 2.06
PCF11O94913 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC27.9■■■□□ 2.06
PCF11O94913 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC27.9■■■□□ 2.06
PCF11O94913 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC27.9■■■□□ 2.06
PCF11O94913 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC27.9■■■□□ 2.06
PCF11O94913 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
PCF11O94913 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC27.9■■■□□ 2.06
PCF11O94913 SIRPAP1-201ENST00000448467 1770 ntBASIC27.9■■■□□ 2.06
PCF11O94913 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC27.9■■■□□ 2.06
PCF11O94913 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
PCF11O94913 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC27.9■■■□□ 2.06
PCF11O94913 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC27.9■■■□□ 2.06
PCF11O94913 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
PCF11O94913 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC27.9■■■□□ 2.06
PCF11O94913 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
PCF11O94913 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC27.9■■■□□ 2.06
PCF11O94913 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC27.9■■■□□ 2.06
PCF11O94913 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC27.9■■■□□ 2.06
PCF11O94913 HLA-J-203ENST00000494367 1087 ntBASIC27.9■■■□□ 2.06
PCF11O94913 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC27.9■■■□□ 2.06
PCF11O94913 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC27.9■■■□□ 2.06
PCF11O94913 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC27.9■■■□□ 2.06
PCF11O94913 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC27.89■■■□□ 2.06
PCF11O94913 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.06
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms