Protein–RNA interactions for Protein: O43353

RIPK2, Receptor-interacting serine/threonine-protein kinase 2, humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK2O43353 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC18.33■□□□□ 0.52
RIPK2O43353 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
RIPK2O43353 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RIPK2O43353 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RIPK2O43353 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
RIPK2O43353 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC18.32■□□□□ 0.52
RIPK2O43353 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RIPK2O43353 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RIPK2O43353 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC18.32■□□□□ 0.52
RIPK2O43353 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RIPK2O43353 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
RIPK2O43353 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
RIPK2O43353 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
RIPK2O43353 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC18.32■□□□□ 0.52
RIPK2O43353 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
RIPK2O43353 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
RIPK2O43353 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC18.32■□□□□ 0.52
RIPK2O43353 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC18.32■□□□□ 0.52
RIPK2O43353 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC18.32■□□□□ 0.52
RIPK2O43353 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC18.32■□□□□ 0.52
RIPK2O43353 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RIPK2O43353 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
RIPK2O43353 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RIPK2O43353 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RIPK2O43353 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RIPK2O43353 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC18.32■□□□□ 0.52
RIPK2O43353 TK2-204ENST00000525974 1178 ntTSL 2 BASIC18.32■□□□□ 0.52
RIPK2O43353 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC18.32■□□□□ 0.52
RIPK2O43353 RARRES2P10-201ENST00000564312 460 ntBASIC18.32■□□□□ 0.52
RIPK2O43353 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RIPK2O43353 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
RIPK2O43353 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC18.32■□□□□ 0.52
RIPK2O43353 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RIPK2O43353 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RIPK2O43353 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC18.32■□□□□ 0.52
RIPK2O43353 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
RIPK2O43353 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC18.32■□□□□ 0.52
RIPK2O43353 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RIPK2O43353 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
RIPK2O43353 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC18.32■□□□□ 0.52
RIPK2O43353 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
RIPK2O43353 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RIPK2O43353 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RIPK2O43353 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RIPK2O43353 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RIPK2O43353 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
RIPK2O43353 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC18.31■□□□□ 0.52
RIPK2O43353 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC18.31■□□□□ 0.52
RIPK2O43353 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RIPK2O43353 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
RIPK2O43353 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC18.31■□□□□ 0.52
RIPK2O43353 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RIPK2O43353 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RIPK2O43353 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
RIPK2O43353 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC18.31■□□□□ 0.52
RIPK2O43353 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC18.31■□□□□ 0.52
RIPK2O43353 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC18.31■□□□□ 0.52
RIPK2O43353 SLC25A1P4-201ENST00000567977 778 ntBASIC18.31■□□□□ 0.52
RIPK2O43353 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
RIPK2O43353 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC18.31■□□□□ 0.52
RIPK2O43353 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RIPK2O43353 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RIPK2O43353 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
RIPK2O43353 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
RIPK2O43353 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RIPK2O43353 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RIPK2O43353 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
RIPK2O43353 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RIPK2O43353 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC18.31■□□□□ 0.52
RIPK2O43353 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC18.31■□□□□ 0.52
RIPK2O43353 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
RIPK2O43353 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RIPK2O43353 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
RIPK2O43353 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
RIPK2O43353 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
RIPK2O43353 HLA-J-201ENST00000462773 1622 ntBASIC18.31■□□□□ 0.52
RIPK2O43353 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
RIPK2O43353 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RIPK2O43353 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
RIPK2O43353 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RIPK2O43353 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
RIPK2O43353 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC18.3■□□□□ 0.52
RIPK2O43353 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
RIPK2O43353 OR6D1P-202ENST00000641007 5290 ntBASIC18.3■□□□□ 0.52
RIPK2O43353 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RIPK2O43353 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RIPK2O43353 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
RIPK2O43353 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC18.3■□□□□ 0.52
RIPK2O43353 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC18.3■□□□□ 0.52
RIPK2O43353 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RIPK2O43353 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC18.3■□□□□ 0.52
RIPK2O43353 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC18.3■□□□□ 0.52
RIPK2O43353 DGCR10-201ENST00000609839 495 ntBASIC18.3■□□□□ 0.52
RIPK2O43353 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RIPK2O43353 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
RIPK2O43353 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RIPK2O43353 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RIPK2O43353 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
RIPK2O43353 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
RIPK2O43353 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms