Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGN4O00479 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HMGN4O00479 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC16.78■□□□□ 0.28
HMGN4O00479 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC16.78■□□□□ 0.28
HMGN4O00479 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGN4O00479 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGN4O00479 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HMGN4O00479 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HMGN4O00479 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC16.78■□□□□ 0.28
HMGN4O00479 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGN4O00479 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGN4O00479 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC16.78■□□□□ 0.28
HMGN4O00479 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGN4O00479 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HMGN4O00479 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC16.78■□□□□ 0.28
HMGN4O00479 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC16.78■□□□□ 0.28
HMGN4O00479 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC16.78■□□□□ 0.28
HMGN4O00479 AC113404.2-201ENST00000507884 177 ntBASIC16.78■□□□□ 0.28
HMGN4O00479 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC16.78■□□□□ 0.28
HMGN4O00479 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC16.78■□□□□ 0.28
HMGN4O00479 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC16.78■□□□□ 0.28
HMGN4O00479 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC16.78■□□□□ 0.28
HMGN4O00479 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HMGN4O00479 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HMGN4O00479 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC16.78■□□□□ 0.28
HMGN4O00479 PP12613-201ENST00000424958 2230 ntBASIC16.78■□□□□ 0.28
HMGN4O00479 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC16.78■□□□□ 0.28
HMGN4O00479 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC16.78■□□□□ 0.28
HMGN4O00479 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC16.78■□□□□ 0.28
HMGN4O00479 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC16.78■□□□□ 0.28
HMGN4O00479 AL355312.1-201ENST00000407115 2176 ntBASIC16.78■□□□□ 0.28
HMGN4O00479 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
HMGN4O00479 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGN4O00479 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HMGN4O00479 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC16.78■□□□□ 0.28
HMGN4O00479 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGN4O00479 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGN4O00479 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGN4O00479 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
HMGN4O00479 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HMGN4O00479 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
HMGN4O00479 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC16.77■□□□□ 0.28
HMGN4O00479 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC16.77■□□□□ 0.28
HMGN4O00479 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
HMGN4O00479 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.28
HMGN4O00479 AC022898.2-201ENST00000616822 1312 ntBASIC16.77■□□□□ 0.28
HMGN4O00479 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC16.77■□□□□ 0.28
HMGN4O00479 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC16.77■□□□□ 0.28
HMGN4O00479 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
HMGN4O00479 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HMGN4O00479 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HMGN4O00479 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
HMGN4O00479 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HMGN4O00479 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HMGN4O00479 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
HMGN4O00479 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HMGN4O00479 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC16.77■□□□□ 0.28
HMGN4O00479 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HMGN4O00479 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
HMGN4O00479 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC16.77■□□□□ 0.28
HMGN4O00479 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
HMGN4O00479 AC010203.1-204ENST00000548782 407 ntBASIC16.77■□□□□ 0.28
HMGN4O00479 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HMGN4O00479 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC16.77■□□□□ 0.28
HMGN4O00479 PODN-203ENST00000395871 2744 ntTSL 5 BASIC16.77■□□□□ 0.28
HMGN4O00479 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
HMGN4O00479 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HMGN4O00479 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HMGN4O00479 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HMGN4O00479 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC16.77■□□□□ 0.27
HMGN4O00479 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC16.77■□□□□ 0.27
HMGN4O00479 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
HMGN4O00479 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HMGN4O00479 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
HMGN4O00479 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC16.77■□□□□ 0.27
HMGN4O00479 AC020916.1-201ENST00000587762 1774 ntBASIC16.77■□□□□ 0.27
HMGN4O00479 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC16.77■□□□□ 0.27
HMGN4O00479 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
HMGN4O00479 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HMGN4O00479 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC16.76■□□□□ 0.27
HMGN4O00479 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC16.76■□□□□ 0.27
HMGN4O00479 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC16.76■□□□□ 0.27
HMGN4O00479 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGN4O00479 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HMGN4O00479 CEP83-AS1-201ENST00000623122 2482 ntBASIC16.76■□□□□ 0.27
HMGN4O00479 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGN4O00479 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGN4O00479 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGN4O00479 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HMGN4O00479 GXYLT1P3-201ENST00000453058 1193 ntBASIC16.76■□□□□ 0.27
HMGN4O00479 RASA4DP-201ENST00000460726 1199 ntBASIC16.76■□□□□ 0.27
HMGN4O00479 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC16.76■□□□□ 0.27
HMGN4O00479 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC16.76■□□□□ 0.27
HMGN4O00479 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC16.76■□□□□ 0.27
HMGN4O00479 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
HMGN4O00479 RPS20-210ENST00000523936 899 ntTSL 2 BASIC16.76■□□□□ 0.27
HMGN4O00479 TK1-205ENST00000590862 642 ntTSL 3 BASIC16.76■□□□□ 0.27
HMGN4O00479 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC16.76■□□□□ 0.27
HMGN4O00479 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
HMGN4O00479 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms