Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
SLC28A1O00337 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SLC28A1O00337 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SLC28A1O00337 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SLC28A1O00337 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC17.38■□□□□ 0.37
SLC28A1O00337 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SLC28A1O00337 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.38■□□□□ 0.37
SLC28A1O00337 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SLC28A1O00337 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
SLC28A1O00337 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SLC28A1O00337 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SLC28A1O00337 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SLC28A1O00337 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SLC28A1O00337 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SLC28A1O00337 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SLC28A1O00337 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
SLC28A1O00337 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.38■□□□□ 0.37
SLC28A1O00337 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
SLC28A1O00337 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
SLC28A1O00337 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC17.38■□□□□ 0.37
SLC28A1O00337 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
SLC28A1O00337 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
SLC28A1O00337 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC17.38■□□□□ 0.37
SLC28A1O00337 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC17.38■□□□□ 0.37
SLC28A1O00337 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC17.38■□□□□ 0.37
SLC28A1O00337 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
SLC28A1O00337 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SLC28A1O00337 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC17.38■□□□□ 0.37
SLC28A1O00337 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
SLC28A1O00337 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SLC28A1O00337 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SLC28A1O00337 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.38■□□□□ 0.37
SLC28A1O00337 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SLC28A1O00337 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC17.38■□□□□ 0.37
SLC28A1O00337 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
SLC28A1O00337 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SLC28A1O00337 AC132938.6-201ENST00000623828 1655 ntBASIC17.38■□□□□ 0.37
SLC28A1O00337 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SLC28A1O00337 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SLC28A1O00337 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.38■□□□□ 0.37
SLC28A1O00337 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC17.38■□□□□ 0.37
SLC28A1O00337 KRT8P9-201ENST00000558927 1449 ntBASIC17.38■□□□□ 0.37
SLC28A1O00337 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SLC28A1O00337 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
SLC28A1O00337 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SLC28A1O00337 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SLC28A1O00337 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SLC28A1O00337 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SLC28A1O00337 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
SLC28A1O00337 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SLC28A1O00337 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SLC28A1O00337 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
SLC28A1O00337 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SLC28A1O00337 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SLC28A1O00337 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
SLC28A1O00337 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SLC28A1O00337 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
SLC28A1O00337 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
SLC28A1O00337 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SLC28A1O00337 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SLC28A1O00337 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SLC28A1O00337 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SLC28A1O00337 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SLC28A1O00337 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SLC28A1O00337 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SLC28A1O00337 CRAT-202ENST00000393384 973 ntTSL 2 BASIC17.37■□□□□ 0.37
SLC28A1O00337 AP000523.1-201ENST00000398242 1049 ntBASIC17.37■□□□□ 0.37
SLC28A1O00337 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC17.37■□□□□ 0.37
SLC28A1O00337 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC17.37■□□□□ 0.37
SLC28A1O00337 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC17.37■□□□□ 0.37
SLC28A1O00337 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SLC28A1O00337 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC17.37■□□□□ 0.37
SLC28A1O00337 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC17.37■□□□□ 0.37
SLC28A1O00337 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SLC28A1O00337 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC17.37■□□□□ 0.37
SLC28A1O00337 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SLC28A1O00337 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC17.37■□□□□ 0.37
SLC28A1O00337 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.37■□□□□ 0.37
SLC28A1O00337 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC17.37■□□□□ 0.37
SLC28A1O00337 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SLC28A1O00337 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.37■□□□□ 0.37
SLC28A1O00337 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
SLC28A1O00337 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
SLC28A1O00337 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
SLC28A1O00337 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC17.37■□□□□ 0.37
SLC28A1O00337 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SLC28A1O00337 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.37■□□□□ 0.37
SLC28A1O00337 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.37■□□□□ 0.37
SLC28A1O00337 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SLC28A1O00337 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
SLC28A1O00337 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
SLC28A1O00337 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SLC28A1O00337 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SLC28A1O00337 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
SLC28A1O00337 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.36■□□□□ 0.37
SLC28A1O00337 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SLC28A1O00337 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SLC28A1O00337 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SLC28A1O00337 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SLC28A1O00337 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms