Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A5A8TX70 NME6-203ENST00000415644 849 ntTSL 2 BASIC13.88□□□□□ -0.19
COL6A5A8TX70 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC13.88□□□□□ -0.19
COL6A5A8TX70 AL592309.1-201ENST00000443127 649 ntBASIC13.88□□□□□ -0.19
COL6A5A8TX70 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A5A8TX70 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC13.88□□□□□ -0.19
COL6A5A8TX70 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC13.88□□□□□ -0.19
COL6A5A8TX70 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC13.88□□□□□ -0.19
COL6A5A8TX70 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A5A8TX70 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A5A8TX70 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A5A8TX70 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC13.88□□□□□ -0.19
COL6A5A8TX70 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A5A8TX70 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A5A8TX70 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC13.88□□□□□ -0.19
COL6A5A8TX70 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A5A8TX70 AL024508.2-201ENST00000607749 1894 ntBASIC13.88□□□□□ -0.19
COL6A5A8TX70 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
COL6A5A8TX70 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A5A8TX70 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
COL6A5A8TX70 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC13.88□□□□□ -0.19
COL6A5A8TX70 AC007967.3-201ENST00000434308 558 ntBASIC13.88□□□□□ -0.19
COL6A5A8TX70 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC13.88□□□□□ -0.19
COL6A5A8TX70 KRT18P65-201ENST00000439811 1286 ntBASIC13.88□□□□□ -0.19
COL6A5A8TX70 AC112698.1-201ENST00000510299 916 ntBASIC13.88□□□□□ -0.19
COL6A5A8TX70 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC13.88□□□□□ -0.19
COL6A5A8TX70 AL162274.1-201ENST00000617191 1098 ntBASIC13.88□□□□□ -0.19
COL6A5A8TX70 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
COL6A5A8TX70 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
COL6A5A8TX70 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
COL6A5A8TX70 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A5A8TX70 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC13.88□□□□□ -0.19
COL6A5A8TX70 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A5A8TX70 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A5A8TX70 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A5A8TX70 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A5A8TX70 MRPS18AP1-201ENST00000414458 589 ntBASIC13.87□□□□□ -0.19
COL6A5A8TX70 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC13.87□□□□□ -0.19
COL6A5A8TX70 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC13.87□□□□□ -0.19
COL6A5A8TX70 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC13.87□□□□□ -0.19
COL6A5A8TX70 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
COL6A5A8TX70 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
COL6A5A8TX70 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC13.87□□□□□ -0.19
COL6A5A8TX70 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A5A8TX70 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A5A8TX70 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A5A8TX70 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC13.87□□□□□ -0.19
COL6A5A8TX70 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A5A8TX70 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC13.87□□□□□ -0.19
COL6A5A8TX70 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC13.87□□□□□ -0.19
COL6A5A8TX70 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC13.87□□□□□ -0.19
COL6A5A8TX70 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC13.87□□□□□ -0.19
COL6A5A8TX70 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A5A8TX70 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A5A8TX70 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC13.87□□□□□ -0.19
COL6A5A8TX70 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
COL6A5A8TX70 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC13.87□□□□□ -0.19
COL6A5A8TX70 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC13.87□□□□□ -0.19
COL6A5A8TX70 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A5A8TX70 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A5A8TX70 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A5A8TX70 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC13.87□□□□□ -0.19
COL6A5A8TX70 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
COL6A5A8TX70 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A5A8TX70 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL6A5A8TX70 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC13.86□□□□□ -0.19
COL6A5A8TX70 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
COL6A5A8TX70 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC13.86□□□□□ -0.19
COL6A5A8TX70 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL6A5A8TX70 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL6A5A8TX70 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL6A5A8TX70 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
COL6A5A8TX70 ELK2AP-201ENST00000392510 1007 ntBASIC13.86□□□□□ -0.19
COL6A5A8TX70 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL6A5A8TX70 BAD-207ENST00000544785 525 ntTSL 3 BASIC13.86□□□□□ -0.19
COL6A5A8TX70 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL6A5A8TX70 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL6A5A8TX70 AC008677.1-201ENST00000519230 1561 ntBASIC13.86□□□□□ -0.19
COL6A5A8TX70 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL6A5A8TX70 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL6A5A8TX70 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL6A5A8TX70 PCDHAC2-203ENST00000615316 3011 ntBASIC13.86□□□□□ -0.19
COL6A5A8TX70 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL6A5A8TX70 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC13.86□□□□□ -0.19
COL6A5A8TX70 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL6A5A8TX70 AC005237.2-201ENST00000434368 219 ntBASIC13.86□□□□□ -0.19
COL6A5A8TX70 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC13.86□□□□□ -0.19
COL6A5A8TX70 AC112191.1-201ENST00000523689 701 ntBASIC13.86□□□□□ -0.19
COL6A5A8TX70 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC13.86□□□□□ -0.19
COL6A5A8TX70 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL6A5A8TX70 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC13.86□□□□□ -0.19
COL6A5A8TX70 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC13.86□□□□□ -0.19
COL6A5A8TX70 AC019129.2-201ENST00000609837 1235 ntBASIC13.86□□□□□ -0.19
COL6A5A8TX70 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC13.86□□□□□ -0.19
COL6A5A8TX70 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL6A5A8TX70 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL6A5A8TX70 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL6A5A8TX70 AC148477.5-201ENST00000625164 1645 ntBASIC13.86□□□□□ -0.19
COL6A5A8TX70 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
COL6A5A8TX70 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms