Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PCDHB3Q9Y5E6 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PCDHB3Q9Y5E6 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PCDHB3Q9Y5E6 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PCDHB3Q9Y5E6 MIR564-202ENST00000385049 94 ntBASIC17.71■□□□□ 0.43
PCDHB3Q9Y5E6 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC17.71■□□□□ 0.43
PCDHB3Q9Y5E6 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC17.71■□□□□ 0.43
PCDHB3Q9Y5E6 ATP5G2P1-201ENST00000433580 426 ntBASIC17.71■□□□□ 0.43
PCDHB3Q9Y5E6 KRT18P23-201ENST00000435622 1283 ntBASIC17.71■□□□□ 0.43
PCDHB3Q9Y5E6 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC17.71■□□□□ 0.43
PCDHB3Q9Y5E6 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PCDHB3Q9Y5E6 AL499627.1-201ENST00000569373 2188 ntBASIC17.71■□□□□ 0.43
PCDHB3Q9Y5E6 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PCDHB3Q9Y5E6 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
PCDHB3Q9Y5E6 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.71■□□□□ 0.43
PCDHB3Q9Y5E6 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PCDHB3Q9Y5E6 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
PCDHB3Q9Y5E6 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.71■□□□□ 0.43
PCDHB3Q9Y5E6 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC17.71■□□□□ 0.43
PCDHB3Q9Y5E6 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
PCDHB3Q9Y5E6 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.42
PCDHB3Q9Y5E6 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.71■□□□□ 0.42
PCDHB3Q9Y5E6 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
PCDHB3Q9Y5E6 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
PCDHB3Q9Y5E6 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.7■□□□□ 0.42
PCDHB3Q9Y5E6 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDHB3Q9Y5E6 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDHB3Q9Y5E6 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
PCDHB3Q9Y5E6 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDHB3Q9Y5E6 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDHB3Q9Y5E6 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDHB3Q9Y5E6 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC17.7■□□□□ 0.42
PCDHB3Q9Y5E6 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PCDHB3Q9Y5E6 AL645929.1-201ENST00000420084 975 ntBASIC17.7■□□□□ 0.42
PCDHB3Q9Y5E6 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC17.7■□□□□ 0.42
PCDHB3Q9Y5E6 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC17.7■□□□□ 0.42
PCDHB3Q9Y5E6 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC17.7■□□□□ 0.42
PCDHB3Q9Y5E6 AC092597.1-201ENST00000487352 616 ntBASIC17.7■□□□□ 0.42
PCDHB3Q9Y5E6 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
PCDHB3Q9Y5E6 VPS72-207ENST00000640458 689 ntTSL 5 BASIC17.7■□□□□ 0.42
PCDHB3Q9Y5E6 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDHB3Q9Y5E6 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.7■□□□□ 0.42
PCDHB3Q9Y5E6 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
PCDHB3Q9Y5E6 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDHB3Q9Y5E6 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
PCDHB3Q9Y5E6 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDHB3Q9Y5E6 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDHB3Q9Y5E6 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PCDHB3Q9Y5E6 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDHB3Q9Y5E6 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDHB3Q9Y5E6 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDHB3Q9Y5E6 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.7■□□□□ 0.42
PCDHB3Q9Y5E6 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
PCDHB3Q9Y5E6 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PCDHB3Q9Y5E6 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.7■□□□□ 0.42
PCDHB3Q9Y5E6 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHB3Q9Y5E6 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHB3Q9Y5E6 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
PCDHB3Q9Y5E6 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHB3Q9Y5E6 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
PCDHB3Q9Y5E6 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.69■□□□□ 0.42
PCDHB3Q9Y5E6 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.69■□□□□ 0.42
PCDHB3Q9Y5E6 AC135776.1-201ENST00000319817 2481 ntBASIC17.69■□□□□ 0.42
PCDHB3Q9Y5E6 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.69■□□□□ 0.42
PCDHB3Q9Y5E6 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHB3Q9Y5E6 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHB3Q9Y5E6 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHB3Q9Y5E6 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHB3Q9Y5E6 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC17.69■□□□□ 0.42
PCDHB3Q9Y5E6 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17.69■□□□□ 0.42
PCDHB3Q9Y5E6 ELP6-205ENST00000439305 880 ntTSL 2 BASIC17.69■□□□□ 0.42
PCDHB3Q9Y5E6 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
PCDHB3Q9Y5E6 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC17.69■□□□□ 0.42
PCDHB3Q9Y5E6 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC17.69■□□□□ 0.42
PCDHB3Q9Y5E6 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHB3Q9Y5E6 AC104390.1-201ENST00000555663 520 ntBASIC17.69■□□□□ 0.42
PCDHB3Q9Y5E6 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
PCDHB3Q9Y5E6 AC068587.9-201ENST00000641814 219 ntBASIC17.69■□□□□ 0.42
PCDHB3Q9Y5E6 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHB3Q9Y5E6 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHB3Q9Y5E6 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHB3Q9Y5E6 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
PCDHB3Q9Y5E6 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHB3Q9Y5E6 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC17.69■□□□□ 0.42
PCDHB3Q9Y5E6 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHB3Q9Y5E6 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHB3Q9Y5E6 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
PCDHB3Q9Y5E6 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHB3Q9Y5E6 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHB3Q9Y5E6 AC034236.2-201ENST00000606662 1610 ntBASIC17.69■□□□□ 0.42
PCDHB3Q9Y5E6 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHB3Q9Y5E6 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
PCDHB3Q9Y5E6 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHB3Q9Y5E6 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.68■□□□□ 0.42
PCDHB3Q9Y5E6 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.68■□□□□ 0.42
PCDHB3Q9Y5E6 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHB3Q9Y5E6 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHB3Q9Y5E6 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHB3Q9Y5E6 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC17.68■□□□□ 0.42
PCDHB3Q9Y5E6 SLC25A6P5-201ENST00000435663 894 ntBASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms