Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS4AQ9UN37 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS4AQ9UN37 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VPS4AQ9UN37 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC17.5■□□□□ 0.39
VPS4AQ9UN37 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS4AQ9UN37 AP000593.1-201ENST00000393668 712 ntBASIC17.5■□□□□ 0.39
VPS4AQ9UN37 PTK2-216ENST00000519881 863 ntTSL 3 BASIC17.5■□□□□ 0.39
VPS4AQ9UN37 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC17.5■□□□□ 0.39
VPS4AQ9UN37 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC17.5■□□□□ 0.39
VPS4AQ9UN37 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VPS4AQ9UN37 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.5■□□□□ 0.39
VPS4AQ9UN37 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS4AQ9UN37 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.5■□□□□ 0.39
VPS4AQ9UN37 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
VPS4AQ9UN37 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC17.5■□□□□ 0.39
VPS4AQ9UN37 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC17.5■□□□□ 0.39
VPS4AQ9UN37 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS4AQ9UN37 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS4AQ9UN37 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS4AQ9UN37 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
VPS4AQ9UN37 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.5■□□□□ 0.39
VPS4AQ9UN37 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS4AQ9UN37 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 BET1L-202ENST00000332865 533 ntTSL 5 BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 MCCD1P1-208ENST00000445732 328 ntBASIC17.49■□□□□ 0.39
VPS4AQ9UN37 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 AL023803.3-201ENST00000615559 522 ntBASIC17.49■□□□□ 0.39
VPS4AQ9UN37 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 AC093677.2-201ENST00000600169 1863 ntBASIC17.49■□□□□ 0.39
VPS4AQ9UN37 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS4AQ9UN37 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.48■□□□□ 0.39
VPS4AQ9UN37 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS4AQ9UN37 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS4AQ9UN37 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.48■□□□□ 0.39
VPS4AQ9UN37 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VPS4AQ9UN37 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.48■□□□□ 0.39
VPS4AQ9UN37 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS4AQ9UN37 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VPS4AQ9UN37 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
VPS4AQ9UN37 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS4AQ9UN37 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VPS4AQ9UN37 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS4AQ9UN37 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS4AQ9UN37 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VPS4AQ9UN37 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
VPS4AQ9UN37 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS4AQ9UN37 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC17.48■□□□□ 0.39
VPS4AQ9UN37 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC17.48■□□□□ 0.39
VPS4AQ9UN37 CD81-212ENST00000526072 1172 ntTSL 5 BASIC17.48■□□□□ 0.39
VPS4AQ9UN37 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC17.48■□□□□ 0.39
VPS4AQ9UN37 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17.48■□□□□ 0.39
VPS4AQ9UN37 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC17.48■□□□□ 0.39
VPS4AQ9UN37 AC012313.10-201ENST00000623509 926 ntBASIC17.48■□□□□ 0.39
VPS4AQ9UN37 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VPS4AQ9UN37 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS4AQ9UN37 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC17.48■□□□□ 0.39
VPS4AQ9UN37 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
VPS4AQ9UN37 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS4AQ9UN37 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
VPS4AQ9UN37 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
VPS4AQ9UN37 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS4AQ9UN37 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 86.5 ms