Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDH9Q9HC56 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDH9Q9HC56 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.68■□□□□ 0.58
PCDH9Q9HC56 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDH9Q9HC56 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDH9Q9HC56 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDH9Q9HC56 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.67■□□□□ 0.58
PCDH9Q9HC56 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PCDH9Q9HC56 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDH9Q9HC56 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDH9Q9HC56 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDH9Q9HC56 ANKRD20A18P-201ENST00000359341 492 ntBASIC18.67■□□□□ 0.58
PCDH9Q9HC56 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PCDH9Q9HC56 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC18.67■□□□□ 0.58
PCDH9Q9HC56 SEC1P-202ENST00000473944 940 ntBASIC18.67■□□□□ 0.58
PCDH9Q9HC56 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDH9Q9HC56 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC18.67■□□□□ 0.58
PCDH9Q9HC56 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC18.67■□□□□ 0.58
PCDH9Q9HC56 RN7SL850P-201ENST00000579959 291 ntBASIC18.67■□□□□ 0.58
PCDH9Q9HC56 AC139887.4-201ENST00000607877 719 ntBASIC18.67■□□□□ 0.58
PCDH9Q9HC56 AL031432.5-201ENST00000641059 760 ntBASIC18.67■□□□□ 0.58
PCDH9Q9HC56 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
PCDH9Q9HC56 EML3-212ENST00000494176 2901 ntTSL 2 BASIC18.67■□□□□ 0.58
PCDH9Q9HC56 EML3-216ENST00000529309 2909 ntTSL 2 BASIC18.67■□□□□ 0.58
PCDH9Q9HC56 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PCDH9Q9HC56 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PCDH9Q9HC56 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDH9Q9HC56 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
PCDH9Q9HC56 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PCDH9Q9HC56 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDH9Q9HC56 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDH9Q9HC56 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
PCDH9Q9HC56 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
PCDH9Q9HC56 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCDH9Q9HC56 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCDH9Q9HC56 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCDH9Q9HC56 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC18.66■□□□□ 0.58
PCDH9Q9HC56 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCDH9Q9HC56 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18.66■□□□□ 0.58
PCDH9Q9HC56 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCDH9Q9HC56 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PCDH9Q9HC56 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PCDH9Q9HC56 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCDH9Q9HC56 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCDH9Q9HC56 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PCDH9Q9HC56 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC18.66■□□□□ 0.58
PCDH9Q9HC56 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC18.66■□□□□ 0.58
PCDH9Q9HC56 ETFA-216ENST00000560726 942 ntTSL 3 BASIC18.66■□□□□ 0.58
PCDH9Q9HC56 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
PCDH9Q9HC56 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PCDH9Q9HC56 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC18.66■□□□□ 0.58
PCDH9Q9HC56 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
PCDH9Q9HC56 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC18.66■□□□□ 0.58
PCDH9Q9HC56 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDH9Q9HC56 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC18.65■□□□□ 0.58
PCDH9Q9HC56 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDH9Q9HC56 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.65■□□□□ 0.58
PCDH9Q9HC56 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
PCDH9Q9HC56 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDH9Q9HC56 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDH9Q9HC56 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDH9Q9HC56 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDH9Q9HC56 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
PCDH9Q9HC56 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.65■□□□□ 0.58
PCDH9Q9HC56 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC18.65■□□□□ 0.58
PCDH9Q9HC56 AC117947.1-201ENST00000427448 529 ntBASIC18.65■□□□□ 0.58
PCDH9Q9HC56 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC18.65■□□□□ 0.58
PCDH9Q9HC56 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC18.65■□□□□ 0.58
PCDH9Q9HC56 YBX1P2-201ENST00000489612 999 ntBASIC18.65■□□□□ 0.58
PCDH9Q9HC56 KRT18P21-201ENST00000515767 1272 ntBASIC18.65■□□□□ 0.58
PCDH9Q9HC56 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PCDH9Q9HC56 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC18.65■□□□□ 0.58
PCDH9Q9HC56 GCSHP2-201ENST00000560971 527 ntBASIC18.65■□□□□ 0.58
PCDH9Q9HC56 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC18.65■□□□□ 0.58
PCDH9Q9HC56 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
PCDH9Q9HC56 AC006011.2-201ENST00000621313 1158 ntBASIC18.65■□□□□ 0.58
PCDH9Q9HC56 AC011558.1-201ENST00000623459 338 ntBASIC18.65■□□□□ 0.58
PCDH9Q9HC56 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PCDH9Q9HC56 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDH9Q9HC56 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDH9Q9HC56 CEP83-AS1-201ENST00000623122 2482 ntBASIC18.65■□□□□ 0.58
PCDH9Q9HC56 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
PCDH9Q9HC56 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.65■□□□□ 0.58
PCDH9Q9HC56 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC18.65■□□□□ 0.58
PCDH9Q9HC56 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDH9Q9HC56 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDH9Q9HC56 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PCDH9Q9HC56 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDH9Q9HC56 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDH9Q9HC56 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDH9Q9HC56 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
PCDH9Q9HC56 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
PCDH9Q9HC56 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
PCDH9Q9HC56 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
PCDH9Q9HC56 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.58
PCDH9Q9HC56 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDH9Q9HC56 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
PCDH9Q9HC56 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
PCDH9Q9HC56 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
PCDH9Q9HC56 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms