Protein–RNA interactions for Protein: Q96T58

SPEN, Msx2-interacting protein, humanhuman

Known RBP Predictions only

Length 3,664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPENQ96T58 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.2■□□□□ 0.18
SPENQ96T58 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SPENQ96T58 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
SPENQ96T58 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SPENQ96T58 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC16.2■□□□□ 0.18
SPENQ96T58 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
SPENQ96T58 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC16.2■□□□□ 0.18
SPENQ96T58 AC079776.2-201ENST00000641154 1609 ntBASIC16.2■□□□□ 0.18
SPENQ96T58 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
SPENQ96T58 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SPENQ96T58 MCCD1P2-201ENST00000423228 335 ntBASIC16.2■□□□□ 0.18
SPENQ96T58 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC16.2■□□□□ 0.18
SPENQ96T58 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SPENQ96T58 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC16.2■□□□□ 0.18
SPENQ96T58 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.2■□□□□ 0.18
SPENQ96T58 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
SPENQ96T58 AL139400.1-201ENST00000366220 510 ntBASIC16.2■□□□□ 0.18
SPENQ96T58 PNKD-204ENST00000436005 978 ntTSL 5 BASIC16.2■□□□□ 0.18
SPENQ96T58 RNA5SP416-201ENST00000516838 111 ntBASIC16.2■□□□□ 0.18
SPENQ96T58 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.2■□□□□ 0.18
SPENQ96T58 AD001527.2-201ENST00000622994 785 ntBASIC16.2■□□□□ 0.18
SPENQ96T58 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SPENQ96T58 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SPENQ96T58 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC16.19■□□□□ 0.18
SPENQ96T58 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SPENQ96T58 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC16.19■□□□□ 0.18
SPENQ96T58 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
SPENQ96T58 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
SPENQ96T58 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
SPENQ96T58 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
SPENQ96T58 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SPENQ96T58 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SPENQ96T58 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC16.19■□□□□ 0.18
SPENQ96T58 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SPENQ96T58 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SPENQ96T58 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
SPENQ96T58 ESPNP-201ENST00000270691 2015 ntBASIC16.19■□□□□ 0.18
SPENQ96T58 AC104581.1-202ENST00000635932 2618 ntBASIC16.19■□□□□ 0.18
SPENQ96T58 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SPENQ96T58 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SPENQ96T58 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC16.19■□□□□ 0.18
SPENQ96T58 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC16.19■□□□□ 0.18
SPENQ96T58 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC16.19■□□□□ 0.18
SPENQ96T58 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
SPENQ96T58 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SPENQ96T58 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
SPENQ96T58 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SPENQ96T58 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC16.19■□□□□ 0.18
SPENQ96T58 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SPENQ96T58 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
SPENQ96T58 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
SPENQ96T58 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC16.19■□□□□ 0.18
SPENQ96T58 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
SPENQ96T58 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SPENQ96T58 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC16.18■□□□□ 0.18
SPENQ96T58 BCRP1-201ENST00000444246 691 ntBASIC16.18■□□□□ 0.18
SPENQ96T58 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC16.18■□□□□ 0.18
SPENQ96T58 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC16.18■□□□□ 0.18
SPENQ96T58 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
SPENQ96T58 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
SPENQ96T58 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SPENQ96T58 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC16.18■□□□□ 0.18
SPENQ96T58 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SPENQ96T58 SIGLEC16-201ENST00000599858 1437 ntBASIC16.18■□□□□ 0.18
SPENQ96T58 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC16.18■□□□□ 0.18
SPENQ96T58 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC16.18■□□□□ 0.18
SPENQ96T58 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SPENQ96T58 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SPENQ96T58 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
SPENQ96T58 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC16.18■□□□□ 0.18
SPENQ96T58 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC16.18■□□□□ 0.18
SPENQ96T58 AL078644.1-201ENST00000609881 752 ntBASIC16.18■□□□□ 0.18
SPENQ96T58 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
SPENQ96T58 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SPENQ96T58 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SPENQ96T58 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SPENQ96T58 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SPENQ96T58 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SPENQ96T58 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC16.18■□□□□ 0.18
SPENQ96T58 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
SPENQ96T58 AC009154.2-201ENST00000621177 724 ntBASIC16.18■□□□□ 0.18
SPENQ96T58 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SPENQ96T58 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SPENQ96T58 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC16.18■□□□□ 0.18
SPENQ96T58 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SPENQ96T58 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC16.18■□□□□ 0.18
SPENQ96T58 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SPENQ96T58 AC100803.2-201ENST00000562459 1963 ntBASIC16.18■□□□□ 0.18
SPENQ96T58 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC16.18■□□□□ 0.18
SPENQ96T58 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
SPENQ96T58 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
SPENQ96T58 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC16.17■□□□□ 0.18
SPENQ96T58 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC16.17■□□□□ 0.18
SPENQ96T58 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
SPENQ96T58 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SPENQ96T58 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
SPENQ96T58 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SPENQ96T58 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SPENQ96T58 WBP2-203ENST00000433525 928 ntTSL 2 BASIC16.17■□□□□ 0.18
SPENQ96T58 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 63.4 ms