Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
USP39Q53GS9 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP39Q53GS9 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
USP39Q53GS9 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC18.34■□□□□ 0.53
USP39Q53GS9 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
USP39Q53GS9 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC18.34■□□□□ 0.53
USP39Q53GS9 THAP5-204ENST00000438865 868 ntTSL 2 BASIC18.34■□□□□ 0.53
USP39Q53GS9 RNPS1P1-201ENST00000507437 918 ntBASIC18.34■□□□□ 0.53
USP39Q53GS9 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC18.34■□□□□ 0.53
USP39Q53GS9 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC18.34■□□□□ 0.53
USP39Q53GS9 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC18.34■□□□□ 0.53
USP39Q53GS9 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC18.34■□□□□ 0.53
USP39Q53GS9 COX5A-204ENST00000567270 579 ntTSL 3 BASIC18.34■□□□□ 0.53
USP39Q53GS9 AC008687.5-201ENST00000593746 558 ntBASIC18.34■□□□□ 0.53
USP39Q53GS9 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC18.34■□□□□ 0.53
USP39Q53GS9 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
USP39Q53GS9 AC114341.1-201ENST00000618070 349 ntBASIC18.34■□□□□ 0.53
USP39Q53GS9 ANKRD20A8P-203ENST00000641373 517 ntBASIC18.34■□□□□ 0.53
USP39Q53GS9 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP39Q53GS9 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP39Q53GS9 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP39Q53GS9 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
USP39Q53GS9 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP39Q53GS9 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP39Q53GS9 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.34■□□□□ 0.53
USP39Q53GS9 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
USP39Q53GS9 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
USP39Q53GS9 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP39Q53GS9 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
USP39Q53GS9 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
USP39Q53GS9 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
USP39Q53GS9 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
USP39Q53GS9 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
USP39Q53GS9 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
USP39Q53GS9 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
USP39Q53GS9 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC18.33■□□□□ 0.53
USP39Q53GS9 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
USP39Q53GS9 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC18.33■□□□□ 0.53
USP39Q53GS9 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC18.33■□□□□ 0.53
USP39Q53GS9 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
USP39Q53GS9 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
USP39Q53GS9 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
USP39Q53GS9 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
USP39Q53GS9 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
USP39Q53GS9 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
USP39Q53GS9 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
USP39Q53GS9 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC18.33■□□□□ 0.52
USP39Q53GS9 AC132008.2-207ENST00000454517 770 ntBASIC18.33■□□□□ 0.52
USP39Q53GS9 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
USP39Q53GS9 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC18.33■□□□□ 0.52
USP39Q53GS9 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
USP39Q53GS9 AC008608.2-201ENST00000606089 416 ntBASIC18.33■□□□□ 0.52
USP39Q53GS9 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.33■□□□□ 0.52
USP39Q53GS9 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
USP39Q53GS9 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
USP39Q53GS9 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
USP39Q53GS9 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
USP39Q53GS9 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
USP39Q53GS9 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP39Q53GS9 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
USP39Q53GS9 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.32■□□□□ 0.52
USP39Q53GS9 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP39Q53GS9 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC18.32■□□□□ 0.52
USP39Q53GS9 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
USP39Q53GS9 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC18.32■□□□□ 0.52
USP39Q53GS9 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP39Q53GS9 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.32■□□□□ 0.52
USP39Q53GS9 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
USP39Q53GS9 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP39Q53GS9 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC18.32■□□□□ 0.52
USP39Q53GS9 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP39Q53GS9 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC18.32■□□□□ 0.52
USP39Q53GS9 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC18.32■□□□□ 0.52
USP39Q53GS9 SLC25A1P1-201ENST00000528351 927 ntBASIC18.32■□□□□ 0.52
USP39Q53GS9 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC18.32■□□□□ 0.52
USP39Q53GS9 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
USP39Q53GS9 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC18.32■□□□□ 0.52
USP39Q53GS9 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.32■□□□□ 0.52
USP39Q53GS9 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP39Q53GS9 KRT8P50-201ENST00000562022 1438 ntBASIC18.32■□□□□ 0.52
USP39Q53GS9 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC18.32■□□□□ 0.52
USP39Q53GS9 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC18.31■□□□□ 0.52
USP39Q53GS9 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USP39Q53GS9 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USP39Q53GS9 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
USP39Q53GS9 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USP39Q53GS9 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
USP39Q53GS9 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
USP39Q53GS9 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.31■□□□□ 0.52
USP39Q53GS9 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USP39Q53GS9 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USP39Q53GS9 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
USP39Q53GS9 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC18.31■□□□□ 0.52
USP39Q53GS9 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC18.31■□□□□ 0.52
USP39Q53GS9 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC18.31■□□□□ 0.52
USP39Q53GS9 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC18.31■□□□□ 0.52
USP39Q53GS9 AC092865.5-201ENST00000545435 363 ntBASIC18.31■□□□□ 0.52
USP39Q53GS9 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC18.31■□□□□ 0.52
USP39Q53GS9 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USP39Q53GS9 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms