Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SF3A1Q15459 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SF3A1Q15459 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SF3A1Q15459 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC20.88■□□□□ 0.93
SF3A1Q15459 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC20.88■□□□□ 0.93
SF3A1Q15459 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SF3A1Q15459 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SF3A1Q15459 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SF3A1Q15459 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC20.88■□□□□ 0.93
SF3A1Q15459 AC009065.1-201ENST00000564055 1225 ntBASIC20.88■□□□□ 0.93
SF3A1Q15459 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC20.88■□□□□ 0.93
SF3A1Q15459 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC20.88■□□□□ 0.93
SF3A1Q15459 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC20.88■□□□□ 0.93
SF3A1Q15459 AC010240.3-201ENST00000607688 395 ntBASIC20.88■□□□□ 0.93
SF3A1Q15459 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SF3A1Q15459 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SF3A1Q15459 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC20.88■□□□□ 0.93
SF3A1Q15459 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SF3A1Q15459 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SF3A1Q15459 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SF3A1Q15459 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SF3A1Q15459 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
SF3A1Q15459 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC20.88■□□□□ 0.93
SF3A1Q15459 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC20.88■□□□□ 0.93
SF3A1Q15459 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SF3A1Q15459 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SF3A1Q15459 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SF3A1Q15459 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC20.88■□□□□ 0.93
SF3A1Q15459 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
SF3A1Q15459 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC20.88■□□□□ 0.93
SF3A1Q15459 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SF3A1Q15459 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC20.88■□□□□ 0.93
SF3A1Q15459 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
SF3A1Q15459 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
SF3A1Q15459 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SF3A1Q15459 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
SF3A1Q15459 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SF3A1Q15459 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
SF3A1Q15459 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC20.87■□□□□ 0.93
SF3A1Q15459 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SF3A1Q15459 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SF3A1Q15459 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC20.87■□□□□ 0.93
SF3A1Q15459 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SF3A1Q15459 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SF3A1Q15459 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SF3A1Q15459 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SF3A1Q15459 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SF3A1Q15459 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SF3A1Q15459 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC20.87■□□□□ 0.93
SF3A1Q15459 GRAMD4P1-201ENST00000435181 1110 ntBASIC20.87■□□□□ 0.93
SF3A1Q15459 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC20.87■□□□□ 0.93
SF3A1Q15459 SEC1P-202ENST00000473944 940 ntBASIC20.87■□□□□ 0.93
SF3A1Q15459 MIR3180-4-201ENST00000582223 153 ntBASIC20.87■□□□□ 0.93
SF3A1Q15459 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SF3A1Q15459 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
SF3A1Q15459 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SF3A1Q15459 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
SF3A1Q15459 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SF3A1Q15459 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
SF3A1Q15459 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC20.87■□□□□ 0.93
SF3A1Q15459 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SF3A1Q15459 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC20.87■□□□□ 0.93
SF3A1Q15459 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC20.87■□□□□ 0.93
SF3A1Q15459 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
SF3A1Q15459 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SF3A1Q15459 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SF3A1Q15459 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
SF3A1Q15459 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SF3A1Q15459 AL024508.2-201ENST00000607749 1894 ntBASIC20.86■□□□□ 0.93
SF3A1Q15459 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SF3A1Q15459 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
SF3A1Q15459 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SF3A1Q15459 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC20.86■□□□□ 0.93
SF3A1Q15459 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SF3A1Q15459 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SF3A1Q15459 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SF3A1Q15459 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SF3A1Q15459 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
SF3A1Q15459 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SF3A1Q15459 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SF3A1Q15459 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SF3A1Q15459 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC20.86■□□□□ 0.93
SF3A1Q15459 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC20.86■□□□□ 0.93
SF3A1Q15459 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SF3A1Q15459 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SF3A1Q15459 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC20.86■□□□□ 0.93
SF3A1Q15459 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SF3A1Q15459 AC024243.1-201ENST00000609234 778 ntBASIC20.86■□□□□ 0.93
SF3A1Q15459 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SF3A1Q15459 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SF3A1Q15459 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SF3A1Q15459 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SF3A1Q15459 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC20.86■□□□□ 0.93
SF3A1Q15459 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SF3A1Q15459 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SF3A1Q15459 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SF3A1Q15459 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
SF3A1Q15459 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SF3A1Q15459 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SF3A1Q15459 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms