Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 FGFR3P6-201ENST00000457012 610 ntBASIC15.51■□□□□ 0.07
ABCA4P78363 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC15.51■□□□□ 0.07
ABCA4P78363 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC15.51■□□□□ 0.07
ABCA4P78363 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC15.51■□□□□ 0.07
ABCA4P78363 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC15.51■□□□□ 0.07
ABCA4P78363 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC15.51■□□□□ 0.07
ABCA4P78363 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
ABCA4P78363 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
ABCA4P78363 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
ABCA4P78363 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
ABCA4P78363 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
ABCA4P78363 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
ABCA4P78363 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
ABCA4P78363 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
ABCA4P78363 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
ABCA4P78363 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
ABCA4P78363 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
ABCA4P78363 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC15.5■□□□□ 0.07
ABCA4P78363 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC15.5■□□□□ 0.07
ABCA4P78363 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
ABCA4P78363 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
ABCA4P78363 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
ABCA4P78363 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC15.5■□□□□ 0.07
ABCA4P78363 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
ABCA4P78363 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
ABCA4P78363 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC15.5■□□□□ 0.07
ABCA4P78363 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
ABCA4P78363 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC15.5■□□□□ 0.07
ABCA4P78363 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
ABCA4P78363 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
ABCA4P78363 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
ABCA4P78363 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC15.5■□□□□ 0.07
ABCA4P78363 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
ABCA4P78363 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
ABCA4P78363 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
ABCA4P78363 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
ABCA4P78363 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
ABCA4P78363 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
ABCA4P78363 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC15.5■□□□□ 0.07
ABCA4P78363 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
ABCA4P78363 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
ABCA4P78363 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC15.5■□□□□ 0.07
ABCA4P78363 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
ABCA4P78363 AC004832.2-201ENST00000426397 482 ntBASIC15.5■□□□□ 0.07
ABCA4P78363 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC15.5■□□□□ 0.07
ABCA4P78363 AL139288.1-201ENST00000623748 933 ntBASIC15.5■□□□□ 0.07
ABCA4P78363 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
ABCA4P78363 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
ABCA4P78363 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
ABCA4P78363 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
ABCA4P78363 AL356309.3-201ENST00000624132 1934 ntBASIC15.49■□□□□ 0.07
ABCA4P78363 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC15.49■□□□□ 0.07
ABCA4P78363 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
ABCA4P78363 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
ABCA4P78363 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
ABCA4P78363 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC15.49■□□□□ 0.07
ABCA4P78363 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
ABCA4P78363 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
ABCA4P78363 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC15.49■□□□□ 0.07
ABCA4P78363 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
ABCA4P78363 MED15P5-201ENST00000423150 992 ntBASIC15.49■□□□□ 0.07
ABCA4P78363 MTCL1P1-201ENST00000446207 792 ntBASIC15.49■□□□□ 0.07
ABCA4P78363 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC15.49■□□□□ 0.07
ABCA4P78363 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
ABCA4P78363 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC15.49■□□□□ 0.07
ABCA4P78363 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC15.49■□□□□ 0.07
ABCA4P78363 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
ABCA4P78363 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
ABCA4P78363 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC15.49■□□□□ 0.07
ABCA4P78363 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
ABCA4P78363 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC15.49■□□□□ 0.07
ABCA4P78363 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
ABCA4P78363 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC15.49■□□□□ 0.07
ABCA4P78363 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
ABCA4P78363 AC116562.4-201ENST00000641316 2276 ntBASIC15.49■□□□□ 0.07
ABCA4P78363 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
ABCA4P78363 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC15.49■□□□□ 0.07
ABCA4P78363 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC15.49■□□□□ 0.07
ABCA4P78363 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
ABCA4P78363 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC15.49■□□□□ 0.07
ABCA4P78363 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC15.49■□□□□ 0.07
ABCA4P78363 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
ABCA4P78363 INIP-202ENST00000374236 874 ntTSL 2 BASIC15.48■□□□□ 0.07
ABCA4P78363 MIR149-201ENST00000384879 89 ntBASIC15.48■□□□□ 0.07
ABCA4P78363 RPS2P1-201ENST00000434010 821 ntBASIC15.48■□□□□ 0.07
ABCA4P78363 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC15.48■□□□□ 0.07
ABCA4P78363 MSRA-206ENST00000521209 814 ntTSL 3 BASIC15.48■□□□□ 0.07
ABCA4P78363 AC034105.1-201ENST00000563488 319 ntBASIC15.48■□□□□ 0.07
ABCA4P78363 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
ABCA4P78363 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
ABCA4P78363 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
ABCA4P78363 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
ABCA4P78363 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC15.48■□□□□ 0.07
ABCA4P78363 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
ABCA4P78363 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
ABCA4P78363 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC15.48■□□□□ 0.07
ABCA4P78363 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
ABCA4P78363 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC15.48■□□□□ 0.07
ABCA4P78363 DNAJB3-201ENST00000446806 729 ntBASIC15.48■□□□□ 0.07
ABCA4P78363 DNAJB3-202ENST00000449667 1266 ntBASIC15.48■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms