Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
MSH6P52701 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
MSH6P52701 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
MSH6P52701 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
MSH6P52701 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC24.88■■□□□ 1.57
MSH6P52701 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
MSH6P52701 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
MSH6P52701 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC24.87■■□□□ 1.57
MSH6P52701 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC24.87■■□□□ 1.57
MSH6P52701 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
MSH6P52701 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC24.87■■□□□ 1.57
MSH6P52701 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC24.87■■□□□ 1.57
MSH6P52701 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC24.87■■□□□ 1.57
MSH6P52701 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC24.87■■□□□ 1.57
MSH6P52701 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC24.87■■□□□ 1.57
MSH6P52701 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC24.87■■□□□ 1.57
MSH6P52701 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC24.87■■□□□ 1.57
MSH6P52701 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC24.87■■□□□ 1.57
MSH6P52701 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC24.87■■□□□ 1.57
MSH6P52701 KRT8P47-201ENST00000604727 1398 ntBASIC24.87■■□□□ 1.57
MSH6P52701 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
MSH6P52701 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC24.87■■□□□ 1.57
MSH6P52701 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC24.86■■□□□ 1.57
MSH6P52701 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
MSH6P52701 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC24.86■■□□□ 1.57
MSH6P52701 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC24.86■■□□□ 1.57
MSH6P52701 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC24.86■■□□□ 1.57
MSH6P52701 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC24.86■■□□□ 1.57
MSH6P52701 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC24.86■■□□□ 1.57
MSH6P52701 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC24.86■■□□□ 1.57
MSH6P52701 RPS15P9-201ENST00000494093 319 ntBASIC24.86■■□□□ 1.57
MSH6P52701 AC122714.2-201ENST00000502787 707 ntBASIC24.86■■□□□ 1.57
MSH6P52701 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC24.86■■□□□ 1.57
MSH6P52701 AC010654.1-201ENST00000615722 808 ntBASIC24.86■■□□□ 1.57
MSH6P52701 AC004790.2-201ENST00000623588 572 ntBASIC24.86■■□□□ 1.57
MSH6P52701 BID-204ENST00000399767 2129 ntTSL 2 BASIC24.86■■□□□ 1.57
MSH6P52701 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
MSH6P52701 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC24.86■■□□□ 1.57
MSH6P52701 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC24.86■■□□□ 1.57
MSH6P52701 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC24.86■■□□□ 1.57
MSH6P52701 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC24.86■■□□□ 1.57
MSH6P52701 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC24.85■■□□□ 1.57
MSH6P52701 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC24.85■■□□□ 1.57
MSH6P52701 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
MSH6P52701 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC24.85■■□□□ 1.57
MSH6P52701 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC24.85■■□□□ 1.57
MSH6P52701 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
MSH6P52701 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
MSH6P52701 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
MSH6P52701 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC24.85■■□□□ 1.57
MSH6P52701 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC24.85■■□□□ 1.57
MSH6P52701 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC24.85■■□□□ 1.57
MSH6P52701 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
MSH6P52701 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
MSH6P52701 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC24.84■■□□□ 1.57
MSH6P52701 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC24.84■■□□□ 1.57
MSH6P52701 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC24.84■■□□□ 1.57
MSH6P52701 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC24.84■■□□□ 1.57
MSH6P52701 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC24.84■■□□□ 1.57
MSH6P52701 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC24.84■■□□□ 1.57
MSH6P52701 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
MSH6P52701 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC24.84■■□□□ 1.57
MSH6P52701 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC24.84■■□□□ 1.57
MSH6P52701 SMN2-210ENST00000511812 867 ntTSL 2 BASIC24.84■■□□□ 1.57
MSH6P52701 AC069262.1-201ENST00000539058 672 ntBASIC24.84■■□□□ 1.57
MSH6P52701 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC24.84■■□□□ 1.57
MSH6P52701 KRT19P2-202ENST00000557173 1012 ntBASIC24.84■■□□□ 1.57
MSH6P52701 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC24.84■■□□□ 1.57
MSH6P52701 AC004877.2-201ENST00000623941 599 ntBASIC24.84■■□□□ 1.57
MSH6P52701 Z92544.3-201ENST00000624747 417 ntBASIC24.84■■□□□ 1.57
MSH6P52701 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
MSH6P52701 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC24.84■■□□□ 1.57
MSH6P52701 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
MSH6P52701 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
MSH6P52701 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC24.84■■□□□ 1.57
MSH6P52701 TBC1D3P5-201ENST00000579401 1545 ntBASIC24.84■■□□□ 1.57
MSH6P52701 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
MSH6P52701 LINC01126-201ENST00000623515 1646 ntBASIC24.84■■□□□ 1.57
MSH6P52701 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC24.84■■□□□ 1.57
MSH6P52701 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
MSH6P52701 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
MSH6P52701 METTL26-204ENST00000397665 558 ntTSL 2 BASIC24.83■■□□□ 1.57
MSH6P52701 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC24.83■■□□□ 1.57
MSH6P52701 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC24.83■■□□□ 1.57
MSH6P52701 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC24.83■■□□□ 1.57
MSH6P52701 AC025678.2-201ENST00000562061 970 ntBASIC24.83■■□□□ 1.57
MSH6P52701 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC24.83■■□□□ 1.57
MSH6P52701 AJ011932.1-201ENST00000621707 465 ntBASIC24.83■■□□□ 1.57
MSH6P52701 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC24.83■■□□□ 1.57
MSH6P52701 MYLKP1-201ENST00000509077 1580 ntBASIC24.83■■□□□ 1.57
MSH6P52701 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC24.83■■□□□ 1.57
MSH6P52701 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
MSH6P52701 ADK-206ENST00000541550 2222 ntTSL 2 BASIC24.83■■□□□ 1.57
MSH6P52701 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC24.82■■□□□ 1.56
MSH6P52701 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
MSH6P52701 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC24.82■■□□□ 1.56
MSH6P52701 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
MSH6P52701 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC24.82■■□□□ 1.56
MSH6P52701 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC24.82■■□□□ 1.56
MSH6P52701 BCAR1-209ENST00000546196 1340 ntBASIC24.82■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms