Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
MSH3P20585 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
MSH3P20585 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC17.99■□□□□ 0.47
MSH3P20585 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
MSH3P20585 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
MSH3P20585 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC17.99■□□□□ 0.47
MSH3P20585 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC17.99■□□□□ 0.47
MSH3P20585 RNF146-204ENST00000476956 884 ntTSL 2 BASIC17.99■□□□□ 0.47
MSH3P20585 FAM86EP-206ENST00000510506 987 ntBASIC17.99■□□□□ 0.47
MSH3P20585 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC17.99■□□□□ 0.47
MSH3P20585 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC17.99■□□□□ 0.47
MSH3P20585 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC17.99■□□□□ 0.47
MSH3P20585 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
MSH3P20585 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
MSH3P20585 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.99■□□□□ 0.47
MSH3P20585 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.99■□□□□ 0.47
MSH3P20585 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
MSH3P20585 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
MSH3P20585 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
MSH3P20585 PHGDH-209ENST00000641074 1780 ntBASIC17.99■□□□□ 0.47
MSH3P20585 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.99■□□□□ 0.47
MSH3P20585 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC17.98■□□□□ 0.47
MSH3P20585 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
MSH3P20585 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
MSH3P20585 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
MSH3P20585 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
MSH3P20585 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
MSH3P20585 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC17.98■□□□□ 0.47
MSH3P20585 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC17.98■□□□□ 0.47
MSH3P20585 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.98■□□□□ 0.47
MSH3P20585 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
MSH3P20585 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
MSH3P20585 OR6D1P-202ENST00000641007 5290 ntBASIC17.98■□□□□ 0.47
MSH3P20585 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.98■□□□□ 0.47
MSH3P20585 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
MSH3P20585 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC17.98■□□□□ 0.47
MSH3P20585 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
MSH3P20585 HES2-202ENST00000377836 507 ntTSL 2 BASIC17.98■□□□□ 0.47
MSH3P20585 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC17.98■□□□□ 0.47
MSH3P20585 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC17.98■□□□□ 0.47
MSH3P20585 PPOX-214ENST00000535223 664 ntTSL 3 BASIC17.98■□□□□ 0.47
MSH3P20585 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC17.98■□□□□ 0.47
MSH3P20585 TPM1-226ENST00000560959 925 ntTSL 2 BASIC17.98■□□□□ 0.47
MSH3P20585 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
MSH3P20585 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
MSH3P20585 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
MSH3P20585 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
MSH3P20585 AC093677.2-201ENST00000600169 1863 ntBASIC17.98■□□□□ 0.47
MSH3P20585 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
MSH3P20585 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
MSH3P20585 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
MSH3P20585 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC17.98■□□□□ 0.47
MSH3P20585 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
MSH3P20585 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.98■□□□□ 0.47
MSH3P20585 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
MSH3P20585 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC17.98■□□□□ 0.47
MSH3P20585 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
MSH3P20585 AC005332.1-201ENST00000577698 1310 ntBASIC17.98■□□□□ 0.47
MSH3P20585 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
MSH3P20585 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.97■□□□□ 0.47
MSH3P20585 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
MSH3P20585 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
MSH3P20585 AC005332.8-201ENST00000622750 2735 ntBASIC17.97■□□□□ 0.47
MSH3P20585 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
MSH3P20585 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
MSH3P20585 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
MSH3P20585 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
MSH3P20585 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC17.97■□□□□ 0.47
MSH3P20585 PCED1CP-201ENST00000419887 785 ntBASIC17.97■□□□□ 0.47
MSH3P20585 ISCU-203ENST00000431221 799 ntTSL 2 BASIC17.97■□□□□ 0.47
MSH3P20585 AC113404.2-201ENST00000507884 177 ntBASIC17.97■□□□□ 0.47
MSH3P20585 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC17.97■□□□□ 0.47
MSH3P20585 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC17.97■□□□□ 0.47
MSH3P20585 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC17.97■□□□□ 0.47
MSH3P20585 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC17.97■□□□□ 0.47
MSH3P20585 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC17.97■□□□□ 0.47
MSH3P20585 NDUFV2-AS1-203ENST00000608008 779 ntBASIC17.97■□□□□ 0.47
MSH3P20585 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC17.97■□□□□ 0.47
MSH3P20585 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
MSH3P20585 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
MSH3P20585 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
MSH3P20585 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
MSH3P20585 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
MSH3P20585 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
MSH3P20585 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.96■□□□□ 0.47
MSH3P20585 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
MSH3P20585 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
MSH3P20585 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
MSH3P20585 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
MSH3P20585 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
MSH3P20585 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17.96■□□□□ 0.47
MSH3P20585 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
MSH3P20585 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC17.96■□□□□ 0.47
MSH3P20585 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
MSH3P20585 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
MSH3P20585 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
MSH3P20585 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC17.96■□□□□ 0.47
MSH3P20585 IGHGP-201ENST00000390555 1178 ntBASIC17.96■□□□□ 0.47
MSH3P20585 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC17.96■□□□□ 0.47
MSH3P20585 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms