Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC17.56■□□□□ 0.4
HOXC4P09017 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HOXC4P09017 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HOXC4P09017 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HOXC4P09017 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC17.56■□□□□ 0.4
HOXC4P09017 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC17.56■□□□□ 0.4
HOXC4P09017 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HOXC4P09017 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HOXC4P09017 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HOXC4P09017 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HOXC4P09017 AC103564.2-201ENST00000432853 1299 ntBASIC17.56■□□□□ 0.4
HOXC4P09017 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HOXC4P09017 SCARNA2-201ENST00000458748 420 ntBASIC17.56■□□□□ 0.4
HOXC4P09017 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HOXC4P09017 COX5A-202ENST00000562233 441 ntTSL 3 BASIC17.56■□□□□ 0.4
HOXC4P09017 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC17.56■□□□□ 0.4
HOXC4P09017 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC17.56■□□□□ 0.4
HOXC4P09017 MTDHP3-201ENST00000594186 672 ntBASIC17.56■□□□□ 0.4
HOXC4P09017 AC116407.2-201ENST00000613639 860 ntBASIC17.56■□□□□ 0.4
HOXC4P09017 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HOXC4P09017 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC17.56■□□□□ 0.4
HOXC4P09017 AP000867.4-201ENST00000641616 219 ntBASIC17.56■□□□□ 0.4
HOXC4P09017 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
HOXC4P09017 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HOXC4P09017 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
HOXC4P09017 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
HOXC4P09017 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HOXC4P09017 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HOXC4P09017 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
HOXC4P09017 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.56■□□□□ 0.4
HOXC4P09017 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
HOXC4P09017 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HOXC4P09017 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
HOXC4P09017 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HOXC4P09017 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
HOXC4P09017 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC17.56■□□□□ 0.4
HOXC4P09017 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
HOXC4P09017 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HOXC4P09017 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC17.55■□□□□ 0.4
HOXC4P09017 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXC4P09017 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.55■□□□□ 0.4
HOXC4P09017 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXC4P09017 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXC4P09017 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC17.55■□□□□ 0.4
HOXC4P09017 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXC4P09017 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
HOXC4P09017 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC17.55■□□□□ 0.4
HOXC4P09017 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXC4P09017 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXC4P09017 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.55■□□□□ 0.4
HOXC4P09017 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HOXC4P09017 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXC4P09017 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXC4P09017 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC17.55■□□□□ 0.4
HOXC4P09017 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXC4P09017 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXC4P09017 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HOXC4P09017 FAM197Y8-203ENST00000450145 560 ntBASIC17.55■□□□□ 0.4
HOXC4P09017 PON3-205ENST00000451904 1053 ntTSL 3 BASIC17.55■□□□□ 0.4
HOXC4P09017 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HOXC4P09017 WDR88-203ENST00000592765 651 ntTSL 5 BASIC17.55■□□□□ 0.4
HOXC4P09017 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC17.55■□□□□ 0.4
HOXC4P09017 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXC4P09017 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXC4P09017 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.55■□□□□ 0.4
HOXC4P09017 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXC4P09017 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXC4P09017 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
HOXC4P09017 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
HOXC4P09017 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXC4P09017 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXC4P09017 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXC4P09017 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
HOXC4P09017 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXC4P09017 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HOXC4P09017 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC17.54■□□□□ 0.4
HOXC4P09017 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HOXC4P09017 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HOXC4P09017 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.54■□□□□ 0.4
HOXC4P09017 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HOXC4P09017 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC17.54■□□□□ 0.4
HOXC4P09017 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
HOXC4P09017 AC010460.3-201ENST00000511359 1579 ntBASIC17.54■□□□□ 0.4
HOXC4P09017 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HOXC4P09017 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HOXC4P09017 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HOXC4P09017 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HOXC4P09017 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HOXC4P09017 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HOXC4P09017 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC17.54■□□□□ 0.4
HOXC4P09017 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC17.54■□□□□ 0.4
HOXC4P09017 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC17.54■□□□□ 0.4
HOXC4P09017 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HOXC4P09017 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC17.54■□□□□ 0.4
HOXC4P09017 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HOXC4P09017 TP73-AS1-207ENST00000624167 988 ntBASIC17.54■□□□□ 0.4
HOXC4P09017 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC17.54■□□□□ 0.4
HOXC4P09017 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.54■□□□□ 0.4
HOXC4P09017 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC17.54■□□□□ 0.4
HOXC4P09017 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms