Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC8□□□□□ -1.13
USH2AO75445 AC132938.5-201ENST00000624980 1813 ntBASIC8□□□□□ -1.13
USH2AO75445 AC148477.5-201ENST00000625164 1645 ntBASIC8□□□□□ -1.13
USH2AO75445 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC8□□□□□ -1.13
USH2AO75445 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
USH2AO75445 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC7.99□□□□□ -1.13
USH2AO75445 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC7.99□□□□□ -1.13
USH2AO75445 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
USH2AO75445 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
USH2AO75445 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
USH2AO75445 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
USH2AO75445 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC7.99□□□□□ -1.13
USH2AO75445 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
USH2AO75445 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC7.99□□□□□ -1.13
USH2AO75445 FAM185BP-201ENST00000443595 716 ntBASIC7.99□□□□□ -1.13
USH2AO75445 ACA64.2-201ENST00000459014 129 ntBASIC7.99□□□□□ -1.13
USH2AO75445 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC7.99□□□□□ -1.13
USH2AO75445 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC7.99□□□□□ -1.13
USH2AO75445 AC008687.5-201ENST00000593746 558 ntBASIC7.99□□□□□ -1.13
USH2AO75445 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC7.99□□□□□ -1.13
USH2AO75445 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC7.99□□□□□ -1.13
USH2AO75445 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
USH2AO75445 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
USH2AO75445 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
USH2AO75445 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC7.99□□□□□ -1.13
USH2AO75445 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC7.99□□□□□ -1.13
USH2AO75445 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC7.99□□□□□ -1.13
USH2AO75445 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC7.99□□□□□ -1.13
USH2AO75445 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC7.99□□□□□ -1.13
USH2AO75445 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC7.99□□□□□ -1.13
USH2AO75445 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
USH2AO75445 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC7.99□□□□□ -1.13
USH2AO75445 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC7.99□□□□□ -1.13
USH2AO75445 LINC00602-201ENST00000629776 2065 ntBASIC7.99□□□□□ -1.13
USH2AO75445 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
USH2AO75445 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
USH2AO75445 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC7.99□□□□□ -1.13
USH2AO75445 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC7.99□□□□□ -1.13
USH2AO75445 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC7.99□□□□□ -1.13
USH2AO75445 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
USH2AO75445 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC7.99□□□□□ -1.13
USH2AO75445 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC7.99□□□□□ -1.13
USH2AO75445 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
USH2AO75445 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC7.99□□□□□ -1.13
USH2AO75445 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC7.99□□□□□ -1.13
USH2AO75445 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC7.99□□□□□ -1.13
USH2AO75445 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC7.99□□□□□ -1.13
USH2AO75445 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC7.99□□□□□ -1.13
USH2AO75445 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
USH2AO75445 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC7.99□□□□□ -1.13
USH2AO75445 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC7.99□□□□□ -1.13
USH2AO75445 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
USH2AO75445 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC7.99□□□□□ -1.13
USH2AO75445 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
USH2AO75445 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC7.99□□□□□ -1.13
USH2AO75445 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC7.99□□□□□ -1.13
USH2AO75445 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
USH2AO75445 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC7.99□□□□□ -1.13
USH2AO75445 AC107890.1-201ENST00000422478 521 ntBASIC7.99□□□□□ -1.13
USH2AO75445 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC7.99□□□□□ -1.13
USH2AO75445 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC7.99□□□□□ -1.13
USH2AO75445 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC7.99□□□□□ -1.13
USH2AO75445 CNN2P2-201ENST00000443536 909 ntBASIC7.99□□□□□ -1.13
USH2AO75445 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
USH2AO75445 CNN2P3-201ENST00000450201 906 ntBASIC7.99□□□□□ -1.13
USH2AO75445 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC7.99□□□□□ -1.13
USH2AO75445 AC099522.2-201ENST00000607001 744 ntBASIC7.99□□□□□ -1.13
USH2AO75445 MIR6805-201ENST00000615055 62 ntBASIC7.99□□□□□ -1.13
USH2AO75445 MIR6787-201ENST00000616675 61 ntBASIC7.99□□□□□ -1.13
USH2AO75445 AL136317.3-201ENST00000618497 906 ntBASIC7.99□□□□□ -1.13
USH2AO75445 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
USH2AO75445 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
USH2AO75445 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
USH2AO75445 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
USH2AO75445 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
USH2AO75445 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC7.99□□□□□ -1.13
USH2AO75445 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC7.99□□□□□ -1.13
USH2AO75445 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC7.99□□□□□ -1.13
USH2AO75445 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC7.98□□□□□ -1.13
USH2AO75445 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC7.98□□□□□ -1.13
USH2AO75445 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC7.98□□□□□ -1.13
USH2AO75445 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
USH2AO75445 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC7.98□□□□□ -1.13
USH2AO75445 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
USH2AO75445 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
USH2AO75445 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC7.98□□□□□ -1.13
USH2AO75445 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC7.98□□□□□ -1.13
USH2AO75445 AC069335.1-201ENST00000489972 472 ntBASIC7.98□□□□□ -1.13
USH2AO75445 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
USH2AO75445 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC7.98□□□□□ -1.13
USH2AO75445 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
USH2AO75445 TK1-204ENST00000590430 683 ntTSL 3 BASIC7.98□□□□□ -1.13
USH2AO75445 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC7.98□□□□□ -1.13
USH2AO75445 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC7.98□□□□□ -1.13
USH2AO75445 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
USH2AO75445 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
USH2AO75445 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC7.98□□□□□ -1.13
USH2AO75445 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
USH2AO75445 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
USH2AO75445 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms