Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS4BO75351 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS4BO75351 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS4BO75351 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VPS4BO75351 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VPS4BO75351 INGX-201ENST00000359239 846 ntBASIC17.74■□□□□ 0.43
VPS4BO75351 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS4BO75351 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VPS4BO75351 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC17.74■□□□□ 0.43
VPS4BO75351 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC17.74■□□□□ 0.43
VPS4BO75351 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC17.74■□□□□ 0.43
VPS4BO75351 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC17.74■□□□□ 0.43
VPS4BO75351 AL691432.3-201ENST00000621860 400 ntBASIC17.74■□□□□ 0.43
VPS4BO75351 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC17.74■□□□□ 0.43
VPS4BO75351 AL121956.5-201ENST00000625261 221 ntBASIC17.74■□□□□ 0.43
VPS4BO75351 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.74■□□□□ 0.43
VPS4BO75351 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17.74■□□□□ 0.43
VPS4BO75351 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
VPS4BO75351 AC096733.2-201ENST00000609937 1394 ntBASIC17.74■□□□□ 0.43
VPS4BO75351 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS4BO75351 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC17.74■□□□□ 0.43
VPS4BO75351 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
VPS4BO75351 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VPS4BO75351 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS4BO75351 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.74■□□□□ 0.43
VPS4BO75351 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS4BO75351 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS4BO75351 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS4BO75351 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS4BO75351 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VPS4BO75351 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS4BO75351 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS4BO75351 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS4BO75351 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS4BO75351 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.73■□□□□ 0.43
VPS4BO75351 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.73■□□□□ 0.43
VPS4BO75351 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VPS4BO75351 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.73■□□□□ 0.43
VPS4BO75351 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.73■□□□□ 0.43
VPS4BO75351 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS4BO75351 TBC1D3P2-202ENST00000577902 1649 ntBASIC17.73■□□□□ 0.43
VPS4BO75351 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VPS4BO75351 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS4BO75351 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VPS4BO75351 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS4BO75351 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VPS4BO75351 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS4BO75351 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS4BO75351 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.73■□□□□ 0.43
VPS4BO75351 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
VPS4BO75351 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS4BO75351 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC17.73■□□□□ 0.43
VPS4BO75351 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC17.73■□□□□ 0.43
VPS4BO75351 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VPS4BO75351 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC17.73■□□□□ 0.43
VPS4BO75351 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC17.73■□□□□ 0.43
VPS4BO75351 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VPS4BO75351 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS4BO75351 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VPS4BO75351 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS4BO75351 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS4BO75351 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VPS4BO75351 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC17.72■□□□□ 0.43
VPS4BO75351 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.72■□□□□ 0.43
VPS4BO75351 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VPS4BO75351 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS4BO75351 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS4BO75351 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
VPS4BO75351 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS4BO75351 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS4BO75351 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS4BO75351 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS4BO75351 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS4BO75351 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.72■□□□□ 0.43
VPS4BO75351 GPAT2P1-201ENST00000444924 1672 ntBASIC17.72■□□□□ 0.43
VPS4BO75351 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VPS4BO75351 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS4BO75351 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC17.72■□□□□ 0.43
VPS4BO75351 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC17.72■□□□□ 0.43
VPS4BO75351 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC17.72■□□□□ 0.43
VPS4BO75351 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC17.72■□□□□ 0.43
VPS4BO75351 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC17.72■□□□□ 0.43
VPS4BO75351 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
VPS4BO75351 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC17.72■□□□□ 0.43
VPS4BO75351 AL031432.5-201ENST00000641059 760 ntBASIC17.72■□□□□ 0.43
VPS4BO75351 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.72■□□□□ 0.43
VPS4BO75351 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC17.72■□□□□ 0.43
VPS4BO75351 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.72■□□□□ 0.43
VPS4BO75351 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.72■□□□□ 0.43
VPS4BO75351 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VPS4BO75351 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.72■□□□□ 0.43
VPS4BO75351 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS4BO75351 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VPS4BO75351 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VPS4BO75351 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
VPS4BO75351 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.71■□□□□ 0.43
VPS4BO75351 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
VPS4BO75351 SIRPAP1-201ENST00000448467 1770 ntBASIC17.71■□□□□ 0.43
VPS4BO75351 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VPS4BO75351 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms