Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
AP4E1Q9UPM8 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
AP4E1Q9UPM8 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
AP4E1Q9UPM8 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
AP4E1Q9UPM8 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
AP4E1Q9UPM8 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
AP4E1Q9UPM8 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
AP4E1Q9UPM8 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
AP4E1Q9UPM8 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
AP4E1Q9UPM8 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
AP4E1Q9UPM8 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC18.79■□□□□ 0.6
AP4E1Q9UPM8 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC18.79■□□□□ 0.6
AP4E1Q9UPM8 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
AP4E1Q9UPM8 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
AP4E1Q9UPM8 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
AP4E1Q9UPM8 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
AP4E1Q9UPM8 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
AP4E1Q9UPM8 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
AP4E1Q9UPM8 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC18.78■□□□□ 0.6
AP4E1Q9UPM8 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC18.78■□□□□ 0.6
AP4E1Q9UPM8 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
AP4E1Q9UPM8 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
AP4E1Q9UPM8 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
AP4E1Q9UPM8 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
AP4E1Q9UPM8 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
AP4E1Q9UPM8 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
AP4E1Q9UPM8 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
AP4E1Q9UPM8 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC18.78■□□□□ 0.6
AP4E1Q9UPM8 AC083849.1-201ENST00000615227 514 ntBASIC18.78■□□□□ 0.6
AP4E1Q9UPM8 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC18.78■□□□□ 0.6
AP4E1Q9UPM8 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
AP4E1Q9UPM8 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
AP4E1Q9UPM8 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
AP4E1Q9UPM8 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
AP4E1Q9UPM8 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
AP4E1Q9UPM8 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC18.78■□□□□ 0.6
AP4E1Q9UPM8 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
AP4E1Q9UPM8 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
AP4E1Q9UPM8 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
AP4E1Q9UPM8 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC18.78■□□□□ 0.6
AP4E1Q9UPM8 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
AP4E1Q9UPM8 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
AP4E1Q9UPM8 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
AP4E1Q9UPM8 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC18.77■□□□□ 0.6
AP4E1Q9UPM8 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC18.77■□□□□ 0.6
AP4E1Q9UPM8 AC068880.1-201ENST00000507289 2297 ntBASIC18.77■□□□□ 0.6
AP4E1Q9UPM8 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
AP4E1Q9UPM8 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
AP4E1Q9UPM8 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
AP4E1Q9UPM8 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
AP4E1Q9UPM8 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
AP4E1Q9UPM8 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
AP4E1Q9UPM8 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC18.77■□□□□ 0.6
AP4E1Q9UPM8 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
AP4E1Q9UPM8 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC18.77■□□□□ 0.6
AP4E1Q9UPM8 FAM210CP-201ENST00000445714 574 ntBASIC18.77■□□□□ 0.6
AP4E1Q9UPM8 AL671277.2-201ENST00000458060 996 ntBASIC18.77■□□□□ 0.6
AP4E1Q9UPM8 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC18.77■□□□□ 0.6
AP4E1Q9UPM8 LY6E-213ENST00000522528 606 ntTSL 3 BASIC18.77■□□□□ 0.6
AP4E1Q9UPM8 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC18.77■□□□□ 0.6
AP4E1Q9UPM8 ZNF444P1-201ENST00000559497 298 ntBASIC18.77■□□□□ 0.6
AP4E1Q9UPM8 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC18.77■□□□□ 0.6
AP4E1Q9UPM8 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC18.77■□□□□ 0.6
AP4E1Q9UPM8 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
AP4E1Q9UPM8 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
AP4E1Q9UPM8 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.59
AP4E1Q9UPM8 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
AP4E1Q9UPM8 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18.77■□□□□ 0.59
AP4E1Q9UPM8 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC18.77■□□□□ 0.59
AP4E1Q9UPM8 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
AP4E1Q9UPM8 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.76■□□□□ 0.59
AP4E1Q9UPM8 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC18.76■□□□□ 0.59
AP4E1Q9UPM8 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
AP4E1Q9UPM8 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
AP4E1Q9UPM8 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
AP4E1Q9UPM8 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
AP4E1Q9UPM8 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
AP4E1Q9UPM8 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
AP4E1Q9UPM8 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
AP4E1Q9UPM8 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
AP4E1Q9UPM8 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
AP4E1Q9UPM8 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC18.76■□□□□ 0.59
AP4E1Q9UPM8 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
AP4E1Q9UPM8 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
AP4E1Q9UPM8 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
AP4E1Q9UPM8 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
AP4E1Q9UPM8 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
AP4E1Q9UPM8 MIR662-201ENST00000384847 95 ntBASIC18.76■□□□□ 0.59
AP4E1Q9UPM8 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC18.76■□□□□ 0.59
AP4E1Q9UPM8 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC18.76■□□□□ 0.59
AP4E1Q9UPM8 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC18.76■□□□□ 0.59
AP4E1Q9UPM8 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC18.76■□□□□ 0.59
AP4E1Q9UPM8 MNT-208ENST00000575394 606 ntTSL 4 BASIC18.76■□□□□ 0.59
AP4E1Q9UPM8 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC18.76■□□□□ 0.59
AP4E1Q9UPM8 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC18.76■□□□□ 0.59
AP4E1Q9UPM8 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC18.76■□□□□ 0.59
AP4E1Q9UPM8 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
AP4E1Q9UPM8 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
AP4E1Q9UPM8 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
AP4E1Q9UPM8 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms