Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.75
LIMA1Q9UHB6 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIMA1Q9UHB6 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
LIMA1Q9UHB6 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIMA1Q9UHB6 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIMA1Q9UHB6 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LIMA1Q9UHB6 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIMA1Q9UHB6 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LIMA1Q9UHB6 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
LIMA1Q9UHB6 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
LIMA1Q9UHB6 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIMA1Q9UHB6 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIMA1Q9UHB6 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIMA1Q9UHB6 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC19.76■□□□□ 0.75
LIMA1Q9UHB6 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LIMA1Q9UHB6 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIMA1Q9UHB6 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LIMA1Q9UHB6 MIR718-201ENST00000390190 70 ntBASIC19.76■□□□□ 0.75
LIMA1Q9UHB6 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC19.76■□□□□ 0.75
LIMA1Q9UHB6 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC19.76■□□□□ 0.75
LIMA1Q9UHB6 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC19.76■□□□□ 0.75
LIMA1Q9UHB6 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LIMA1Q9UHB6 NT5C-210ENST00000582160 860 ntTSL 2 BASIC19.76■□□□□ 0.75
LIMA1Q9UHB6 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC19.76■□□□□ 0.75
LIMA1Q9UHB6 AC024243.1-201ENST00000609234 778 ntBASIC19.76■□□□□ 0.75
LIMA1Q9UHB6 SNX21-213ENST00000614929 587 ntTSL 5 BASIC19.76■□□□□ 0.75
LIMA1Q9UHB6 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIMA1Q9UHB6 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC19.76■□□□□ 0.75
LIMA1Q9UHB6 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
LIMA1Q9UHB6 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIMA1Q9UHB6 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LIMA1Q9UHB6 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIMA1Q9UHB6 AC009053.2-201ENST00000563701 2365 ntBASIC19.76■□□□□ 0.75
LIMA1Q9UHB6 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC19.76■□□□□ 0.75
LIMA1Q9UHB6 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LIMA1Q9UHB6 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LIMA1Q9UHB6 BOC-212ENST00000485230 2173 ntTSL 2 BASIC19.76■□□□□ 0.75
LIMA1Q9UHB6 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
LIMA1Q9UHB6 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC19.75■□□□□ 0.75
LIMA1Q9UHB6 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC19.75■□□□□ 0.75
LIMA1Q9UHB6 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LIMA1Q9UHB6 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC19.75■□□□□ 0.75
LIMA1Q9UHB6 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIMA1Q9UHB6 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
LIMA1Q9UHB6 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LIMA1Q9UHB6 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIMA1Q9UHB6 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC19.75■□□□□ 0.75
LIMA1Q9UHB6 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIMA1Q9UHB6 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC19.75■□□□□ 0.75
LIMA1Q9UHB6 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
LIMA1Q9UHB6 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC19.75■□□□□ 0.75
LIMA1Q9UHB6 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
LIMA1Q9UHB6 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIMA1Q9UHB6 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC19.75■□□□□ 0.75
LIMA1Q9UHB6 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LIMA1Q9UHB6 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
LIMA1Q9UHB6 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LIMA1Q9UHB6 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIMA1Q9UHB6 AL355075.4-201ENST00000554988 638 ntBASIC19.75■□□□□ 0.75
LIMA1Q9UHB6 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC19.75■□□□□ 0.75
LIMA1Q9UHB6 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC19.75■□□□□ 0.75
LIMA1Q9UHB6 GLDC-219ENST00000640208 420 ntTSL 2 BASIC19.75■□□□□ 0.75
LIMA1Q9UHB6 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIMA1Q9UHB6 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIMA1Q9UHB6 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LIMA1Q9UHB6 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LIMA1Q9UHB6 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
LIMA1Q9UHB6 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LIMA1Q9UHB6 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LIMA1Q9UHB6 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIMA1Q9UHB6 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LIMA1Q9UHB6 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
LIMA1Q9UHB6 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
LIMA1Q9UHB6 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIMA1Q9UHB6 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC19.74■□□□□ 0.75
LIMA1Q9UHB6 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
LIMA1Q9UHB6 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIMA1Q9UHB6 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIMA1Q9UHB6 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIMA1Q9UHB6 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIMA1Q9UHB6 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC19.74■□□□□ 0.75
LIMA1Q9UHB6 AC009947.2-201ENST00000444014 672 ntBASIC19.74■□□□□ 0.75
LIMA1Q9UHB6 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC19.74■□□□□ 0.75
LIMA1Q9UHB6 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC19.74■□□□□ 0.75
LIMA1Q9UHB6 MIR3917-201ENST00000580971 93 ntBASIC19.74■□□□□ 0.75
LIMA1Q9UHB6 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIMA1Q9UHB6 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC19.74■□□□□ 0.75
LIMA1Q9UHB6 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LIMA1Q9UHB6 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIMA1Q9UHB6 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LIMA1Q9UHB6 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LIMA1Q9UHB6 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIMA1Q9UHB6 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LIMA1Q9UHB6 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIMA1Q9UHB6 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC19.74■□□□□ 0.75
LIMA1Q9UHB6 AC022898.2-201ENST00000616822 1312 ntBASIC19.74■□□□□ 0.75
LIMA1Q9UHB6 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIMA1Q9UHB6 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC19.73■□□□□ 0.75
LIMA1Q9UHB6 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIMA1Q9UHB6 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms