Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC20.96■□□□□ 0.95
CCDC39Q9UFE4 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
CCDC39Q9UFE4 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC20.96■□□□□ 0.95
CCDC39Q9UFE4 C2orf69P3-201ENST00000565542 1120 ntBASIC20.96■□□□□ 0.95
CCDC39Q9UFE4 AL353719.1-201ENST00000566847 864 ntBASIC20.96■□□□□ 0.95
CCDC39Q9UFE4 AL023803.3-201ENST00000615559 522 ntBASIC20.96■□□□□ 0.95
CCDC39Q9UFE4 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC39Q9UFE4 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC39Q9UFE4 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
CCDC39Q9UFE4 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC39Q9UFE4 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC39Q9UFE4 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC39Q9UFE4 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC39Q9UFE4 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC39Q9UFE4 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC39Q9UFE4 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC20.95■□□□□ 0.94
CCDC39Q9UFE4 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC39Q9UFE4 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC20.95■□□□□ 0.94
CCDC39Q9UFE4 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC20.95■□□□□ 0.94
CCDC39Q9UFE4 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC20.95■□□□□ 0.94
CCDC39Q9UFE4 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
CCDC39Q9UFE4 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC20.95■□□□□ 0.94
CCDC39Q9UFE4 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC20.95■□□□□ 0.94
CCDC39Q9UFE4 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC20.95■□□□□ 0.94
CCDC39Q9UFE4 MIR3180-5-201ENST00000583743 153 ntBASIC20.95■□□□□ 0.94
CCDC39Q9UFE4 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC20.95■□□□□ 0.94
CCDC39Q9UFE4 GLDC-219ENST00000640208 420 ntTSL 2 BASIC20.95■□□□□ 0.94
CCDC39Q9UFE4 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC39Q9UFE4 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC20.95■□□□□ 0.94
CCDC39Q9UFE4 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC39Q9UFE4 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC39Q9UFE4 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC20.95■□□□□ 0.94
CCDC39Q9UFE4 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC20.95■□□□□ 0.94
CCDC39Q9UFE4 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC20.95■□□□□ 0.94
CCDC39Q9UFE4 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC20.94■□□□□ 0.94
CCDC39Q9UFE4 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC20.94■□□□□ 0.94
CCDC39Q9UFE4 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC39Q9UFE4 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC39Q9UFE4 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC20.94■□□□□ 0.94
CCDC39Q9UFE4 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC20.94■□□□□ 0.94
CCDC39Q9UFE4 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC39Q9UFE4 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC20.94■□□□□ 0.94
CCDC39Q9UFE4 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC20.94■□□□□ 0.94
CCDC39Q9UFE4 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC39Q9UFE4 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC39Q9UFE4 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC20.94■□□□□ 0.94
CCDC39Q9UFE4 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC39Q9UFE4 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC39Q9UFE4 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC20.94■□□□□ 0.94
CCDC39Q9UFE4 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
CCDC39Q9UFE4 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC39Q9UFE4 KRT18P41-201ENST00000518924 1277 ntBASIC20.94■□□□□ 0.94
CCDC39Q9UFE4 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC20.94■□□□□ 0.94
CCDC39Q9UFE4 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC39Q9UFE4 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC20.94■□□□□ 0.94
CCDC39Q9UFE4 AC116562.4-202ENST00000641738 218 ntBASIC20.94■□□□□ 0.94
CCDC39Q9UFE4 PKD1P1-201ENST00000458669 6805 ntBASIC20.94■□□□□ 0.94
CCDC39Q9UFE4 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC39Q9UFE4 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC20.94■□□□□ 0.94
CCDC39Q9UFE4 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
CCDC39Q9UFE4 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC20.94■□□□□ 0.94
CCDC39Q9UFE4 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC20.94■□□□□ 0.94
CCDC39Q9UFE4 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC20.94■□□□□ 0.94
CCDC39Q9UFE4 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC39Q9UFE4 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC39Q9UFE4 AC034236.2-201ENST00000606662 1610 ntBASIC20.93■□□□□ 0.94
CCDC39Q9UFE4 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC39Q9UFE4 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC20.93■□□□□ 0.94
CCDC39Q9UFE4 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC39Q9UFE4 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC39Q9UFE4 AL139384.1-201ENST00000612143 3047 ntBASIC20.93■□□□□ 0.94
CCDC39Q9UFE4 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC39Q9UFE4 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC20.93■□□□□ 0.94
CCDC39Q9UFE4 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
CCDC39Q9UFE4 AP003041.3-201ENST00000527151 707 ntBASIC20.93■□□□□ 0.94
CCDC39Q9UFE4 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC20.93■□□□□ 0.94
CCDC39Q9UFE4 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC39Q9UFE4 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC39Q9UFE4 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC39Q9UFE4 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC39Q9UFE4 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC39Q9UFE4 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC20.93■□□□□ 0.94
CCDC39Q9UFE4 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC20.93■□□□□ 0.94
CCDC39Q9UFE4 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC20.93■□□□□ 0.94
CCDC39Q9UFE4 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC39Q9UFE4 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC20.93■□□□□ 0.94
CCDC39Q9UFE4 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC20.92■□□□□ 0.94
CCDC39Q9UFE4 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC39Q9UFE4 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC39Q9UFE4 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC39Q9UFE4 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC39Q9UFE4 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC39Q9UFE4 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
CCDC39Q9UFE4 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC20.92■□□□□ 0.94
CCDC39Q9UFE4 ELP6-205ENST00000439305 880 ntTSL 2 BASIC20.92■□□□□ 0.94
CCDC39Q9UFE4 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC20.92■□□□□ 0.94
CCDC39Q9UFE4 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
CCDC39Q9UFE4 BX088651.1-201ENST00000540551 451 ntBASIC20.92■□□□□ 0.94
CCDC39Q9UFE4 MIR4674-201ENST00000582457 87 ntBASIC20.92■□□□□ 0.94
CCDC39Q9UFE4 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms