Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC21.27■■□□□ 1
DDX4Q9NQI0 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
DDX4Q9NQI0 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
DDX4Q9NQI0 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
DDX4Q9NQI0 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
DDX4Q9NQI0 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC21.27■■□□□ 1
DDX4Q9NQI0 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC21.27■■□□□ 1
DDX4Q9NQI0 CSF3-203ENST00000394148 622 ntTSL 3 BASIC21.27■■□□□ 1
DDX4Q9NQI0 RPL13AP23-201ENST00000480739 586 ntBASIC21.27■■□□□ 1
DDX4Q9NQI0 AC093909.1-201ENST00000504731 1122 ntBASIC21.27■■□□□ 1
DDX4Q9NQI0 PNMT-203ENST00000581428 677 ntTSL 2 BASIC21.27■■□□□ 1
DDX4Q9NQI0 NKAPP1-205ENST00000585790 367 ntBASIC21.27■■□□□ 1
DDX4Q9NQI0 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC21.27■■□□□ 1
DDX4Q9NQI0 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
DDX4Q9NQI0 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
DDX4Q9NQI0 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC21.27■■□□□ 1
DDX4Q9NQI0 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
DDX4Q9NQI0 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC21.27■□□□□ 0.99
DDX4Q9NQI0 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■□□□□ 0.99
DDX4Q9NQI0 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
DDX4Q9NQI0 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC21.26■□□□□ 0.99
DDX4Q9NQI0 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
DDX4Q9NQI0 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC21.26■□□□□ 0.99
DDX4Q9NQI0 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC21.26■□□□□ 0.99
DDX4Q9NQI0 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
DDX4Q9NQI0 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC21.26■□□□□ 0.99
DDX4Q9NQI0 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
DDX4Q9NQI0 SOD2-201ENST00000337404 991 ntTSL 2 BASIC21.26■□□□□ 0.99
DDX4Q9NQI0 FAM220CP-201ENST00000395253 831 ntBASIC21.26■□□□□ 0.99
DDX4Q9NQI0 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
DDX4Q9NQI0 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC21.26■□□□□ 0.99
DDX4Q9NQI0 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
DDX4Q9NQI0 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
DDX4Q9NQI0 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
DDX4Q9NQI0 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
DDX4Q9NQI0 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
DDX4Q9NQI0 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC21.26■□□□□ 0.99
DDX4Q9NQI0 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
DDX4Q9NQI0 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC21.25■□□□□ 0.99
DDX4Q9NQI0 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
DDX4Q9NQI0 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.25■□□□□ 0.99
DDX4Q9NQI0 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
DDX4Q9NQI0 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC21.25■□□□□ 0.99
DDX4Q9NQI0 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
DDX4Q9NQI0 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC21.25■□□□□ 0.99
DDX4Q9NQI0 AC096633.1-201ENST00000422446 749 ntBASIC21.25■□□□□ 0.99
DDX4Q9NQI0 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
DDX4Q9NQI0 POLD2P1-201ENST00000511220 997 ntBASIC21.25■□□□□ 0.99
DDX4Q9NQI0 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC21.25■□□□□ 0.99
DDX4Q9NQI0 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC21.25■□□□□ 0.99
DDX4Q9NQI0 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC21.25■□□□□ 0.99
DDX4Q9NQI0 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC21.25■□□□□ 0.99
DDX4Q9NQI0 GPALPP1-207ENST00000611650 899 ntBASIC21.25■□□□□ 0.99
DDX4Q9NQI0 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC21.25■□□□□ 0.99
DDX4Q9NQI0 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
DDX4Q9NQI0 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
DDX4Q9NQI0 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
DDX4Q9NQI0 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
DDX4Q9NQI0 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC21.24■□□□□ 0.99
DDX4Q9NQI0 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
DDX4Q9NQI0 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
DDX4Q9NQI0 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
DDX4Q9NQI0 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC21.24■□□□□ 0.99
DDX4Q9NQI0 IGHV3-22-201ENST00000520721 359 ntBASIC21.24■□□□□ 0.99
DDX4Q9NQI0 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC21.24■□□□□ 0.99
DDX4Q9NQI0 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
DDX4Q9NQI0 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
DDX4Q9NQI0 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
DDX4Q9NQI0 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC21.24■□□□□ 0.99
DDX4Q9NQI0 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
DDX4Q9NQI0 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
DDX4Q9NQI0 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC21.24■□□□□ 0.99
DDX4Q9NQI0 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
DDX4Q9NQI0 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
DDX4Q9NQI0 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
DDX4Q9NQI0 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
DDX4Q9NQI0 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC21.24■□□□□ 0.99
DDX4Q9NQI0 TBC1D3P5-201ENST00000579401 1545 ntBASIC21.24■□□□□ 0.99
DDX4Q9NQI0 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
DDX4Q9NQI0 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
DDX4Q9NQI0 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
DDX4Q9NQI0 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
DDX4Q9NQI0 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
DDX4Q9NQI0 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
DDX4Q9NQI0 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
DDX4Q9NQI0 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
DDX4Q9NQI0 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
DDX4Q9NQI0 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC21.23■□□□□ 0.99
DDX4Q9NQI0 KRT18P58-201ENST00000527480 1120 ntBASIC21.23■□□□□ 0.99
DDX4Q9NQI0 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
DDX4Q9NQI0 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
DDX4Q9NQI0 AL139288.1-201ENST00000623748 933 ntBASIC21.23■□□□□ 0.99
DDX4Q9NQI0 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
DDX4Q9NQI0 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
DDX4Q9NQI0 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
DDX4Q9NQI0 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
DDX4Q9NQI0 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
DDX4Q9NQI0 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC21.23■□□□□ 0.99
DDX4Q9NQI0 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC21.23■□□□□ 0.99
DDX4Q9NQI0 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC21.22■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms