Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NKX3-1Q99801 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NKX3-1Q99801 NF2-208ENST00000403435 2568 ntTSL 5 BASIC15.82■□□□□ 0.12
NKX3-1Q99801 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
NKX3-1Q99801 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
NKX3-1Q99801 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
NKX3-1Q99801 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
NKX3-1Q99801 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
NKX3-1Q99801 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC15.81■□□□□ 0.12
NKX3-1Q99801 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
NKX3-1Q99801 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC15.81■□□□□ 0.12
NKX3-1Q99801 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
NKX3-1Q99801 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
NKX3-1Q99801 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
NKX3-1Q99801 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
NKX3-1Q99801 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
NKX3-1Q99801 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
NKX3-1Q99801 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
NKX3-1Q99801 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC15.81■□□□□ 0.12
NKX3-1Q99801 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
NKX3-1Q99801 SAPCD2P4-201ENST00000424595 1171 ntBASIC15.81■□□□□ 0.12
NKX3-1Q99801 AL353807.1-201ENST00000427475 662 ntBASIC15.81■□□□□ 0.12
NKX3-1Q99801 MCCD1P1-208ENST00000445732 328 ntBASIC15.81■□□□□ 0.12
NKX3-1Q99801 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
NKX3-1Q99801 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC15.81■□□□□ 0.12
NKX3-1Q99801 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
NKX3-1Q99801 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
NKX3-1Q99801 SLC25A1P4-201ENST00000567977 778 ntBASIC15.81■□□□□ 0.12
NKX3-1Q99801 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
NKX3-1Q99801 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC15.81■□□□□ 0.12
NKX3-1Q99801 MIR4674-201ENST00000582457 87 ntBASIC15.81■□□□□ 0.12
NKX3-1Q99801 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC15.81■□□□□ 0.12
NKX3-1Q99801 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
NKX3-1Q99801 AC141586.5-201ENST00000624546 2050 ntBASIC15.81■□□□□ 0.12
NKX3-1Q99801 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC15.81■□□□□ 0.12
NKX3-1Q99801 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
NKX3-1Q99801 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
NKX3-1Q99801 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
NKX3-1Q99801 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC15.81■□□□□ 0.12
NKX3-1Q99801 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
NKX3-1Q99801 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
NKX3-1Q99801 NME9-203ENST00000383180 2133 ntTSL 2 BASIC15.8■□□□□ 0.12
NKX3-1Q99801 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
NKX3-1Q99801 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
NKX3-1Q99801 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
NKX3-1Q99801 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC15.8■□□□□ 0.12
NKX3-1Q99801 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
NKX3-1Q99801 AC036111.1-201ENST00000533973 1582 ntBASIC15.8■□□□□ 0.12
NKX3-1Q99801 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
NKX3-1Q99801 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
NKX3-1Q99801 FLJ13224-201ENST00000313737 1514 ntBASIC15.8■□□□□ 0.12
NKX3-1Q99801 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
NKX3-1Q99801 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
NKX3-1Q99801 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
NKX3-1Q99801 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
NKX3-1Q99801 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
NKX3-1Q99801 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
NKX3-1Q99801 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC15.8■□□□□ 0.12
NKX3-1Q99801 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
NKX3-1Q99801 MFAP1P1-201ENST00000442257 1255 ntBASIC15.8■□□□□ 0.12
NKX3-1Q99801 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC15.8■□□□□ 0.12
NKX3-1Q99801 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC15.8■□□□□ 0.12
NKX3-1Q99801 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC15.8■□□□□ 0.12
NKX3-1Q99801 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
NKX3-1Q99801 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
NKX3-1Q99801 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
NKX3-1Q99801 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
NKX3-1Q99801 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
NKX3-1Q99801 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC15.8■□□□□ 0.12
NKX3-1Q99801 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
NKX3-1Q99801 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
NKX3-1Q99801 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
NKX3-1Q99801 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC15.79■□□□□ 0.12
NKX3-1Q99801 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC15.79■□□□□ 0.12
NKX3-1Q99801 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
NKX3-1Q99801 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
NKX3-1Q99801 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
NKX3-1Q99801 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
NKX3-1Q99801 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
NKX3-1Q99801 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
NKX3-1Q99801 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC15.79■□□□□ 0.12
NKX3-1Q99801 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC15.79■□□□□ 0.12
NKX3-1Q99801 SDHAP2-201ENST00000455183 2001 ntBASIC15.79■□□□□ 0.12
NKX3-1Q99801 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
NKX3-1Q99801 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
NKX3-1Q99801 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC15.79■□□□□ 0.12
NKX3-1Q99801 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
NKX3-1Q99801 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
NKX3-1Q99801 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
NKX3-1Q99801 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
NKX3-1Q99801 RPS2P55-201ENST00000397318 883 ntBASIC15.79■□□□□ 0.12
NKX3-1Q99801 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
NKX3-1Q99801 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
NKX3-1Q99801 AC107956.1-201ENST00000494359 873 ntBASIC15.79■□□□□ 0.12
NKX3-1Q99801 KRT18P41-201ENST00000518924 1277 ntBASIC15.79■□□□□ 0.12
NKX3-1Q99801 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC15.79■□□□□ 0.12
NKX3-1Q99801 REXO2-216ENST00000544196 452 ntTSL 3 BASIC15.79■□□□□ 0.12
NKX3-1Q99801 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC15.79■□□□□ 0.12
NKX3-1Q99801 MIR4497-201ENST00000583208 89 ntBASIC15.79■□□□□ 0.12
NKX3-1Q99801 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 65 ms