Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL12A1Q99715 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL12A1Q99715 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL12A1Q99715 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC15.72■□□□□ 0.11
COL12A1Q99715 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL12A1Q99715 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC15.72■□□□□ 0.11
COL12A1Q99715 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC15.72■□□□□ 0.11
COL12A1Q99715 SPDYE22P-201ENST00000582158 798 ntBASIC15.72■□□□□ 0.11
COL12A1Q99715 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL12A1Q99715 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL12A1Q99715 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC15.72■□□□□ 0.11
COL12A1Q99715 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL12A1Q99715 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC15.72■□□□□ 0.11
COL12A1Q99715 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
COL12A1Q99715 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL12A1Q99715 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL12A1Q99715 LINC00602-201ENST00000629776 2065 ntBASIC15.71■□□□□ 0.11
COL12A1Q99715 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
COL12A1Q99715 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL12A1Q99715 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL12A1Q99715 AC079776.2-201ENST00000641154 1609 ntBASIC15.71■□□□□ 0.11
COL12A1Q99715 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL12A1Q99715 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
COL12A1Q99715 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC15.71■□□□□ 0.11
COL12A1Q99715 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL12A1Q99715 SIGLEC16-201ENST00000599858 1437 ntBASIC15.71■□□□□ 0.11
COL12A1Q99715 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
COL12A1Q99715 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL12A1Q99715 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
COL12A1Q99715 HNRNPFP1-201ENST00000391730 1133 ntBASIC15.71■□□□□ 0.11
COL12A1Q99715 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC15.71■□□□□ 0.11
COL12A1Q99715 HNRNPA1P40-201ENST00000426371 1278 ntBASIC15.71■□□□□ 0.11
COL12A1Q99715 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL12A1Q99715 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
COL12A1Q99715 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC15.71■□□□□ 0.11
COL12A1Q99715 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
COL12A1Q99715 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL12A1Q99715 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC15.71■□□□□ 0.11
COL12A1Q99715 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL12A1Q99715 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC15.71■□□□□ 0.11
COL12A1Q99715 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
COL12A1Q99715 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
COL12A1Q99715 AL499627.1-201ENST00000569373 2188 ntBASIC15.71■□□□□ 0.1
COL12A1Q99715 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
COL12A1Q99715 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC15.71■□□□□ 0.1
COL12A1Q99715 KRT18P41-201ENST00000518924 1277 ntBASIC15.71■□□□□ 0.1
COL12A1Q99715 AC009154.2-201ENST00000621177 724 ntBASIC15.71■□□□□ 0.1
COL12A1Q99715 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC15.71■□□□□ 0.1
COL12A1Q99715 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC15.7■□□□□ 0.1
COL12A1Q99715 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
COL12A1Q99715 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL12A1Q99715 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL12A1Q99715 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC15.7■□□□□ 0.1
COL12A1Q99715 SRP9-204ENST00000619790 377 ntTSL 2 BASIC15.7■□□□□ 0.1
COL12A1Q99715 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC15.7■□□□□ 0.1
COL12A1Q99715 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
COL12A1Q99715 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL12A1Q99715 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC15.7■□□□□ 0.1
COL12A1Q99715 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL12A1Q99715 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL12A1Q99715 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL12A1Q99715 SOD2-201ENST00000337404 991 ntTSL 2 BASIC15.7■□□□□ 0.1
COL12A1Q99715 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
COL12A1Q99715 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC15.7■□□□□ 0.1
COL12A1Q99715 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC15.7■□□□□ 0.1
COL12A1Q99715 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC15.7■□□□□ 0.1
COL12A1Q99715 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL12A1Q99715 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL12A1Q99715 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL12A1Q99715 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL12A1Q99715 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL12A1Q99715 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL12A1Q99715 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC15.69■□□□□ 0.1
COL12A1Q99715 AC004945.1-201ENST00000416738 983 ntBASIC15.69■□□□□ 0.1
COL12A1Q99715 BX005266.1-201ENST00000473402 457 ntBASIC15.69■□□□□ 0.1
COL12A1Q99715 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
COL12A1Q99715 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
COL12A1Q99715 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
COL12A1Q99715 NFYC-AS1-201ENST00000606277 1687 ntBASIC15.69■□□□□ 0.1
COL12A1Q99715 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL12A1Q99715 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL12A1Q99715 EFS-203ENST00000429593 2610 ntTSL 2 BASIC15.69■□□□□ 0.1
COL12A1Q99715 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC15.69■□□□□ 0.1
COL12A1Q99715 FAM86GP-201ENST00000448322 971 ntBASIC15.69■□□□□ 0.1
COL12A1Q99715 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC15.69■□□□□ 0.1
COL12A1Q99715 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC15.69■□□□□ 0.1
COL12A1Q99715 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC15.69■□□□□ 0.1
COL12A1Q99715 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC15.69■□□□□ 0.1
COL12A1Q99715 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL12A1Q99715 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
COL12A1Q99715 RAC2-204ENST00000406508 893 ntTSL 5 BASIC15.69■□□□□ 0.1
COL12A1Q99715 IGLL3P-201ENST00000412472 434 ntBASIC15.69■□□□□ 0.1
COL12A1Q99715 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL12A1Q99715 RPS2P32-201ENST00000439199 892 ntBASIC15.69■□□□□ 0.1
COL12A1Q99715 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC15.69■□□□□ 0.1
COL12A1Q99715 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC15.69■□□□□ 0.1
COL12A1Q99715 HILS1-202ENST00000545329 423 ntBASIC15.69■□□□□ 0.1
COL12A1Q99715 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC15.69■□□□□ 0.1
COL12A1Q99715 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL12A1Q99715 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms