Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
IFT140Q96RY7 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC29.75■■■□□ 2.35
IFT140Q96RY7 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC29.75■■■□□ 2.35
IFT140Q96RY7 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC29.75■■■□□ 2.35
IFT140Q96RY7 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
IFT140Q96RY7 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
IFT140Q96RY7 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
IFT140Q96RY7 NEK7-201ENST00000367383 586 ntTSL 2 BASIC29.74■■■□□ 2.35
IFT140Q96RY7 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
IFT140Q96RY7 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
IFT140Q96RY7 S100A2-206ENST00000497140 697 ntTSL 2 BASIC29.74■■■□□ 2.35
IFT140Q96RY7 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC29.74■■■□□ 2.35
IFT140Q96RY7 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
IFT140Q96RY7 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC29.74■■■□□ 2.35
IFT140Q96RY7 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
IFT140Q96RY7 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC29.74■■■□□ 2.35
IFT140Q96RY7 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC29.74■■■□□ 2.35
IFT140Q96RY7 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
IFT140Q96RY7 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC29.74■■■□□ 2.35
IFT140Q96RY7 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC29.74■■■□□ 2.35
IFT140Q96RY7 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
IFT140Q96RY7 AC236430.1-201ENST00000402231 743 ntBASIC29.74■■■□□ 2.35
IFT140Q96RY7 AC002472.2-201ENST00000442739 958 ntBASIC29.74■■■□□ 2.35
IFT140Q96RY7 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
IFT140Q96RY7 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
IFT140Q96RY7 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC29.73■■■□□ 2.35
IFT140Q96RY7 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC29.73■■■□□ 2.35
IFT140Q96RY7 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC29.73■■■□□ 2.35
IFT140Q96RY7 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
IFT140Q96RY7 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
IFT140Q96RY7 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC29.73■■■□□ 2.35
IFT140Q96RY7 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
IFT140Q96RY7 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC29.73■■■□□ 2.35
IFT140Q96RY7 KLF4P1-201ENST00000412782 1185 ntBASIC29.73■■■□□ 2.35
IFT140Q96RY7 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC29.73■■■□□ 2.35
IFT140Q96RY7 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC29.73■■■□□ 2.35
IFT140Q96RY7 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC29.73■■■□□ 2.35
IFT140Q96RY7 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC29.73■■■□□ 2.35
IFT140Q96RY7 AL353135.1-201ENST00000606729 504 ntBASIC29.73■■■□□ 2.35
IFT140Q96RY7 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC29.73■■■□□ 2.35
IFT140Q96RY7 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
IFT140Q96RY7 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
IFT140Q96RY7 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
IFT140Q96RY7 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC29.72■■■□□ 2.35
IFT140Q96RY7 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC29.72■■■□□ 2.35
IFT140Q96RY7 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
IFT140Q96RY7 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC29.72■■■□□ 2.35
IFT140Q96RY7 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC29.72■■■□□ 2.35
IFT140Q96RY7 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC29.72■■■□□ 2.35
IFT140Q96RY7 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC29.72■■■□□ 2.35
IFT140Q96RY7 MEIS3P1-201ENST00000495167 958 ntBASIC29.72■■■□□ 2.35
IFT140Q96RY7 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC29.72■■■□□ 2.35
IFT140Q96RY7 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC29.72■■■□□ 2.35
IFT140Q96RY7 NMU-203ENST00000507338 658 ntTSL 3 BASIC29.72■■■□□ 2.35
IFT140Q96RY7 AC023141.13-201ENST00000604991 943 ntBASIC29.72■■■□□ 2.35
IFT140Q96RY7 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC29.72■■■□□ 2.35
IFT140Q96RY7 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC29.72■■■□□ 2.35
IFT140Q96RY7 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
IFT140Q96RY7 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC29.72■■■□□ 2.35
IFT140Q96RY7 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC29.72■■■□□ 2.35
IFT140Q96RY7 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
IFT140Q96RY7 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC29.72■■■□□ 2.35
IFT140Q96RY7 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC29.72■■■□□ 2.35
IFT140Q96RY7 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC29.71■■■□□ 2.35
IFT140Q96RY7 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
IFT140Q96RY7 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC29.71■■■□□ 2.35
IFT140Q96RY7 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC29.71■■■□□ 2.35
IFT140Q96RY7 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
IFT140Q96RY7 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC29.71■■■□□ 2.35
IFT140Q96RY7 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
IFT140Q96RY7 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC29.71■■■□□ 2.35
IFT140Q96RY7 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC29.71■■■□□ 2.35
IFT140Q96RY7 AL627223.1-201ENST00000416693 442 ntBASIC29.71■■■□□ 2.35
IFT140Q96RY7 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC29.71■■■□□ 2.35
IFT140Q96RY7 SIGLEC30P-201ENST00000455569 941 ntBASIC29.71■■■□□ 2.35
IFT140Q96RY7 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC29.71■■■□□ 2.35
IFT140Q96RY7 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC29.71■■■□□ 2.35
IFT140Q96RY7 NAA60-208ENST00000570819 833 ntTSL 2 BASIC29.71■■■□□ 2.35
IFT140Q96RY7 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
IFT140Q96RY7 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC29.71■■■□□ 2.35
IFT140Q96RY7 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
IFT140Q96RY7 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
IFT140Q96RY7 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC29.7■■■□□ 2.35
IFT140Q96RY7 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC29.7■■■□□ 2.35
IFT140Q96RY7 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC29.7■■■□□ 2.35
IFT140Q96RY7 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
IFT140Q96RY7 AP002414.1-201ENST00000391405 1147 ntBASIC29.7■■■□□ 2.35
IFT140Q96RY7 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC29.7■■■□□ 2.35
IFT140Q96RY7 TERF1P3-201ENST00000505638 1227 ntBASIC29.7■■■□□ 2.35
IFT140Q96RY7 AC051619.7-201ENST00000568314 623 ntBASIC29.7■■■□□ 2.35
IFT140Q96RY7 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC29.7■■■□□ 2.35
IFT140Q96RY7 AC007064.4-201ENST00000637740 555 ntBASIC29.7■■■□□ 2.35
IFT140Q96RY7 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC29.7■■■□□ 2.34
IFT140Q96RY7 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.34
IFT140Q96RY7 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC29.7■■■□□ 2.34
IFT140Q96RY7 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC29.7■■■□□ 2.34
IFT140Q96RY7 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
IFT140Q96RY7 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC29.69■■■□□ 2.34
IFT140Q96RY7 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC29.69■■■□□ 2.34
IFT140Q96RY7 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC29.69■■■□□ 2.34
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms