Protein–RNA interactions for Protein: Q96P44

COL21A1, Collagen alpha-1(XXI) chain, humanhuman

Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1Q96P44 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC17.12■□□□□ 0.33
COL21A1Q96P44 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC17.12■□□□□ 0.33
COL21A1Q96P44 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL21A1Q96P44 AC140113.3-201ENST00000605663 199 ntBASIC17.12■□□□□ 0.33
COL21A1Q96P44 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL21A1Q96P44 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL21A1Q96P44 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL21A1Q96P44 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.12■□□□□ 0.33
COL21A1Q96P44 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.12■□□□□ 0.33
COL21A1Q96P44 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL21A1Q96P44 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
COL21A1Q96P44 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL21A1Q96P44 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL21A1Q96P44 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL21A1Q96P44 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
COL21A1Q96P44 HOXB1-202ENST00000577092 1414 ntBASIC17.12■□□□□ 0.33
COL21A1Q96P44 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
COL21A1Q96P44 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.12■□□□□ 0.33
COL21A1Q96P44 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.12■□□□□ 0.33
COL21A1Q96P44 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL21A1Q96P44 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL21A1Q96P44 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL21A1Q96P44 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.11■□□□□ 0.33
COL21A1Q96P44 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
COL21A1Q96P44 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
COL21A1Q96P44 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.11■□□□□ 0.33
COL21A1Q96P44 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL21A1Q96P44 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL21A1Q96P44 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL21A1Q96P44 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.11■□□□□ 0.33
COL21A1Q96P44 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL21A1Q96P44 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL21A1Q96P44 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL21A1Q96P44 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
COL21A1Q96P44 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL21A1Q96P44 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL21A1Q96P44 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL21A1Q96P44 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
COL21A1Q96P44 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
COL21A1Q96P44 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL21A1Q96P44 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL21A1Q96P44 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC17.11■□□□□ 0.33
COL21A1Q96P44 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC17.11■□□□□ 0.33
COL21A1Q96P44 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC17.11■□□□□ 0.33
COL21A1Q96P44 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC17.11■□□□□ 0.33
COL21A1Q96P44 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC17.11■□□□□ 0.33
COL21A1Q96P44 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL21A1Q96P44 AL031432.5-201ENST00000641059 760 ntBASIC17.11■□□□□ 0.33
COL21A1Q96P44 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL21A1Q96P44 AC138028.4-201ENST00000564984 1845 ntBASIC17.11■□□□□ 0.33
COL21A1Q96P44 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL21A1Q96P44 GNAS-203ENST00000306120 1878 ntBASIC17.11■□□□□ 0.33
COL21A1Q96P44 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL21A1Q96P44 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL21A1Q96P44 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
COL21A1Q96P44 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
COL21A1Q96P44 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
COL21A1Q96P44 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL21A1Q96P44 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL21A1Q96P44 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL21A1Q96P44 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL21A1Q96P44 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL21A1Q96P44 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL21A1Q96P44 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.11■□□□□ 0.33
COL21A1Q96P44 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL21A1Q96P44 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL21A1Q96P44 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL21A1Q96P44 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.1■□□□□ 0.33
COL21A1Q96P44 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.1■□□□□ 0.33
COL21A1Q96P44 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL21A1Q96P44 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL21A1Q96P44 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL21A1Q96P44 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL21A1Q96P44 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL21A1Q96P44 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL21A1Q96P44 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
COL21A1Q96P44 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
COL21A1Q96P44 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL21A1Q96P44 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL21A1Q96P44 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC17.1■□□□□ 0.33
COL21A1Q96P44 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL21A1Q96P44 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC17.1■□□□□ 0.33
COL21A1Q96P44 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC17.1■□□□□ 0.33
COL21A1Q96P44 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC17.1■□□□□ 0.33
COL21A1Q96P44 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC17.1■□□□□ 0.33
COL21A1Q96P44 KRT18P21-201ENST00000515767 1272 ntBASIC17.1■□□□□ 0.33
COL21A1Q96P44 RN7SL850P-201ENST00000579959 291 ntBASIC17.1■□□□□ 0.33
COL21A1Q96P44 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC17.1■□□□□ 0.33
COL21A1Q96P44 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC17.1■□□□□ 0.33
COL21A1Q96P44 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL21A1Q96P44 PKD1P1-201ENST00000458669 6805 ntBASIC17.1■□□□□ 0.33
COL21A1Q96P44 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL21A1Q96P44 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL21A1Q96P44 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL21A1Q96P44 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL21A1Q96P44 FST-202ENST00000396947 2538 ntTSL 5 BASIC17.1■□□□□ 0.33
COL21A1Q96P44 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL21A1Q96P44 GMCL1P1-201ENST00000463439 1581 ntBASIC17.1■□□□□ 0.33
COL21A1Q96P44 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL21A1Q96P44 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms