Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AC103564.2-201ENST00000432853 1299 ntBASIC23.96■■□□□ 1.43
USP54Q70EL1 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC23.96■■□□□ 1.43
USP54Q70EL1 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC23.96■■□□□ 1.43
USP54Q70EL1 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC23.96■■□□□ 1.43
USP54Q70EL1 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC23.96■■□□□ 1.43
USP54Q70EL1 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC23.96■■□□□ 1.43
USP54Q70EL1 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
USP54Q70EL1 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC23.96■■□□□ 1.43
USP54Q70EL1 FUT8-AS1-201ENST00000621019 1521 ntBASIC23.96■■□□□ 1.43
USP54Q70EL1 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC23.96■■□□□ 1.43
USP54Q70EL1 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
USP54Q70EL1 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC23.96■■□□□ 1.43
USP54Q70EL1 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
USP54Q70EL1 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC23.96■■□□□ 1.43
USP54Q70EL1 AC132938.5-201ENST00000624980 1813 ntBASIC23.96■■□□□ 1.43
USP54Q70EL1 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC23.96■■□□□ 1.43
USP54Q70EL1 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
USP54Q70EL1 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
USP54Q70EL1 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
USP54Q70EL1 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC23.95■■□□□ 1.43
USP54Q70EL1 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC23.95■■□□□ 1.43
USP54Q70EL1 ARTN-206ENST00000472435 402 ntTSL 3 BASIC23.95■■□□□ 1.43
USP54Q70EL1 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC23.95■■□□□ 1.43
USP54Q70EL1 TBC1D3P5-201ENST00000579401 1545 ntBASIC23.95■■□□□ 1.43
USP54Q70EL1 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
USP54Q70EL1 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC23.95■■□□□ 1.43
USP54Q70EL1 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC23.95■■□□□ 1.42
USP54Q70EL1 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC23.95■■□□□ 1.42
USP54Q70EL1 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
USP54Q70EL1 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC23.95■■□□□ 1.42
USP54Q70EL1 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC23.95■■□□□ 1.42
USP54Q70EL1 AC064836.3-201ENST00000607928 673 ntBASIC23.95■■□□□ 1.42
USP54Q70EL1 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC23.95■■□□□ 1.42
USP54Q70EL1 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
USP54Q70EL1 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
USP54Q70EL1 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
USP54Q70EL1 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
USP54Q70EL1 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC23.94■■□□□ 1.42
USP54Q70EL1 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
USP54Q70EL1 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC23.94■■□□□ 1.42
USP54Q70EL1 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC23.94■■□□□ 1.42
USP54Q70EL1 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC23.94■■□□□ 1.42
USP54Q70EL1 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC23.94■■□□□ 1.42
USP54Q70EL1 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
USP54Q70EL1 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
USP54Q70EL1 DDX43P3-201ENST00000441064 443 ntBASIC23.94■■□□□ 1.42
USP54Q70EL1 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
USP54Q70EL1 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC23.94■■□□□ 1.42
USP54Q70EL1 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC23.94■■□□□ 1.42
USP54Q70EL1 AL805961.1-202ENST00000641562 540 ntBASIC23.94■■□□□ 1.42
USP54Q70EL1 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC23.94■■□□□ 1.42
USP54Q70EL1 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
USP54Q70EL1 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC23.93■■□□□ 1.42
USP54Q70EL1 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC23.93■■□□□ 1.42
USP54Q70EL1 BEX3-201ENST00000361298 921 ntTSL 2 BASIC23.93■■□□□ 1.42
USP54Q70EL1 PMP22-202ENST00000395936 816 ntTSL 3 BASIC23.93■■□□□ 1.42
USP54Q70EL1 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC23.93■■□□□ 1.42
USP54Q70EL1 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC23.93■■□□□ 1.42
USP54Q70EL1 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC23.93■■□□□ 1.42
USP54Q70EL1 AL589182.2-201ENST00000619332 1049 ntBASIC23.93■■□□□ 1.42
USP54Q70EL1 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC23.93■■□□□ 1.42
USP54Q70EL1 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
USP54Q70EL1 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
USP54Q70EL1 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
USP54Q70EL1 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
USP54Q70EL1 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
USP54Q70EL1 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
USP54Q70EL1 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC23.93■■□□□ 1.42
USP54Q70EL1 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC23.93■■□□□ 1.42
USP54Q70EL1 FIS1-203ENST00000442303 631 ntTSL 3 BASIC23.92■■□□□ 1.42
USP54Q70EL1 AP006288.1-201ENST00000446065 395 ntBASIC23.92■■□□□ 1.42
USP54Q70EL1 URGCP-206ENST00000446958 365 ntTSL 2 BASIC23.92■■□□□ 1.42
USP54Q70EL1 PON3-205ENST00000451904 1053 ntTSL 3 BASIC23.92■■□□□ 1.42
USP54Q70EL1 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC23.92■■□□□ 1.42
USP54Q70EL1 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC23.92■■□□□ 1.42
USP54Q70EL1 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC23.92■■□□□ 1.42
USP54Q70EL1 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC23.92■■□□□ 1.42
USP54Q70EL1 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
USP54Q70EL1 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
USP54Q70EL1 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
USP54Q70EL1 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC23.92■■□□□ 1.42
USP54Q70EL1 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
USP54Q70EL1 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
USP54Q70EL1 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
USP54Q70EL1 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
USP54Q70EL1 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
USP54Q70EL1 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
USP54Q70EL1 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
USP54Q70EL1 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
USP54Q70EL1 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC23.92■■□□□ 1.42
USP54Q70EL1 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC23.92■■□□□ 1.42
USP54Q70EL1 DNAJB3-201ENST00000446806 729 ntBASIC23.92■■□□□ 1.42
USP54Q70EL1 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
USP54Q70EL1 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC23.92■■□□□ 1.42
USP54Q70EL1 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC23.92■■□□□ 1.42
USP54Q70EL1 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC23.92■■□□□ 1.42
USP54Q70EL1 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC23.92■■□□□ 1.42
USP54Q70EL1 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
USP54Q70EL1 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC23.91■■□□□ 1.42
USP54Q70EL1 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms