Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC12.87□□□□□ -0.35
COL7A1Q02388 AC093520.2-201ENST00000561830 333 ntBASIC12.87□□□□□ -0.35
COL7A1Q02388 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC12.87□□□□□ -0.35
COL7A1Q02388 AL390955.2-201ENST00000603032 514 ntBASIC12.87□□□□□ -0.35
COL7A1Q02388 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC12.87□□□□□ -0.35
COL7A1Q02388 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC12.87□□□□□ -0.35
COL7A1Q02388 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
COL7A1Q02388 NCF1C-201ENST00000438382 1427 ntBASIC12.87□□□□□ -0.35
COL7A1Q02388 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL7A1Q02388 AC132938.6-201ENST00000623828 1655 ntBASIC12.86□□□□□ -0.35
COL7A1Q02388 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL7A1Q02388 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL7A1Q02388 RIN3-211ENST00000557762 517 ntTSL 3 BASIC12.86□□□□□ -0.35
COL7A1Q02388 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
COL7A1Q02388 AC006557.2-201ENST00000592985 1240 ntBASIC12.86□□□□□ -0.35
COL7A1Q02388 AC068587.9-201ENST00000641814 219 ntBASIC12.86□□□□□ -0.35
COL7A1Q02388 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL7A1Q02388 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
COL7A1Q02388 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC12.86□□□□□ -0.35
COL7A1Q02388 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC12.86□□□□□ -0.35
COL7A1Q02388 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC12.86□□□□□ -0.35
COL7A1Q02388 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC12.86□□□□□ -0.35
COL7A1Q02388 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL7A1Q02388 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
COL7A1Q02388 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC12.86□□□□□ -0.35
COL7A1Q02388 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL7A1Q02388 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC12.86□□□□□ -0.35
COL7A1Q02388 AC141586.3-201ENST00000562166 1838 ntBASIC12.86□□□□□ -0.35
COL7A1Q02388 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL7A1Q02388 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
COL7A1Q02388 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
COL7A1Q02388 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC12.86□□□□□ -0.35
COL7A1Q02388 PAWRP1-201ENST00000451083 565 ntBASIC12.86□□□□□ -0.35
COL7A1Q02388 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
COL7A1Q02388 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC12.86□□□□□ -0.35
COL7A1Q02388 AL589182.2-201ENST00000619332 1049 ntBASIC12.86□□□□□ -0.35
COL7A1Q02388 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
COL7A1Q02388 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL7A1Q02388 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL7A1Q02388 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
COL7A1Q02388 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC12.86□□□□□ -0.35
COL7A1Q02388 MED29-202ENST00000594368 1471 ntTSL 2 BASIC12.86□□□□□ -0.35
COL7A1Q02388 AL032819.2-201ENST00000624543 2162 ntBASIC12.86□□□□□ -0.35
COL7A1Q02388 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL7A1Q02388 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC12.85□□□□□ -0.35
COL7A1Q02388 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC12.85□□□□□ -0.35
COL7A1Q02388 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC12.85□□□□□ -0.35
COL7A1Q02388 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL7A1Q02388 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
COL7A1Q02388 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL7A1Q02388 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
COL7A1Q02388 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL7A1Q02388 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL7A1Q02388 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL7A1Q02388 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC12.85□□□□□ -0.35
COL7A1Q02388 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
COL7A1Q02388 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL7A1Q02388 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC12.85□□□□□ -0.35
COL7A1Q02388 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC12.85□□□□□ -0.35
COL7A1Q02388 SPDYE21P-201ENST00000413323 827 ntBASIC12.85□□□□□ -0.35
COL7A1Q02388 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
COL7A1Q02388 SLC4A1APP2-201ENST00000424054 1259 ntBASIC12.85□□□□□ -0.35
COL7A1Q02388 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
COL7A1Q02388 ARTN-206ENST00000472435 402 ntTSL 3 BASIC12.85□□□□□ -0.35
COL7A1Q02388 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC12.85□□□□□ -0.35
COL7A1Q02388 AC091812.2-201ENST00000619081 385 ntBASIC12.85□□□□□ -0.35
COL7A1Q02388 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL7A1Q02388 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
COL7A1Q02388 AC004877.2-201ENST00000623941 599 ntBASIC12.85□□□□□ -0.35
COL7A1Q02388 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC12.85□□□□□ -0.35
COL7A1Q02388 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL7A1Q02388 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC12.85□□□□□ -0.35
COL7A1Q02388 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL7A1Q02388 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC12.85□□□□□ -0.35
COL7A1Q02388 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC12.85□□□□□ -0.35
COL7A1Q02388 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL7A1Q02388 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
COL7A1Q02388 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC12.85□□□□□ -0.35
COL7A1Q02388 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC12.85□□□□□ -0.35
COL7A1Q02388 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL7A1Q02388 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL7A1Q02388 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL7A1Q02388 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL7A1Q02388 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
COL7A1Q02388 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL7A1Q02388 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL7A1Q02388 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
COL7A1Q02388 OARD1-208ENST00000469104 704 ntTSL 2 BASIC12.85□□□□□ -0.35
COL7A1Q02388 RNA5SP421-201ENST00000516864 134 ntBASIC12.85□□□□□ -0.35
COL7A1Q02388 AC051619.7-201ENST00000568314 623 ntBASIC12.85□□□□□ -0.35
COL7A1Q02388 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC12.85□□□□□ -0.35
COL7A1Q02388 AC010654.1-201ENST00000615722 808 ntBASIC12.85□□□□□ -0.35
COL7A1Q02388 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC12.85□□□□□ -0.35
COL7A1Q02388 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL7A1Q02388 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL7A1Q02388 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
COL7A1Q02388 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL7A1Q02388 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL7A1Q02388 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC12.84□□□□□ -0.35
COL7A1Q02388 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms