Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC11.13□□□□□ -0.63
HSPG2P98160 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
HSPG2P98160 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC11.13□□□□□ -0.63
HSPG2P98160 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
HSPG2P98160 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC11.12□□□□□ -0.63
HSPG2P98160 AC092919.2-201ENST00000623631 1645 ntBASIC11.12□□□□□ -0.63
HSPG2P98160 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
HSPG2P98160 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
HSPG2P98160 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC11.12□□□□□ -0.63
HSPG2P98160 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC11.12□□□□□ -0.63
HSPG2P98160 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC11.12□□□□□ -0.63
HSPG2P98160 AC067863.1-201ENST00000494933 530 ntBASIC11.12□□□□□ -0.63
HSPG2P98160 AC025678.2-201ENST00000562061 970 ntBASIC11.12□□□□□ -0.63
HSPG2P98160 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
HSPG2P98160 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
HSPG2P98160 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
HSPG2P98160 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
HSPG2P98160 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC11.12□□□□□ -0.63
HSPG2P98160 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
HSPG2P98160 AL512356.2-201ENST00000546955 174 ntBASIC11.12□□□□□ -0.63
HSPG2P98160 CR383656.12-201ENST00000549567 513 ntBASIC11.12□□□□□ -0.63
HSPG2P98160 AL596325.1-201ENST00000563991 1082 ntBASIC11.12□□□□□ -0.63
HSPG2P98160 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC11.12□□□□□ -0.63
HSPG2P98160 REXO1L3P-201ENST00000622202 1288 ntBASIC11.12□□□□□ -0.63
HSPG2P98160 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
HSPG2P98160 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC11.12□□□□□ -0.63
HSPG2P98160 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
HSPG2P98160 TUBB3P1-201ENST00000405796 1332 ntBASIC11.12□□□□□ -0.63
HSPG2P98160 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
HSPG2P98160 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC11.12□□□□□ -0.63
HSPG2P98160 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
HSPG2P98160 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
HSPG2P98160 BSG-215ENST00000618006 1329 ntTSL 2 BASIC11.12□□□□□ -0.63
HSPG2P98160 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
HSPG2P98160 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
HSPG2P98160 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC11.12□□□□□ -0.63
HSPG2P98160 AC003669.1-201ENST00000334569 611 ntBASIC11.12□□□□□ -0.63
HSPG2P98160 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
HSPG2P98160 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC11.12□□□□□ -0.63
HSPG2P98160 GPS2P2-201ENST00000430745 888 ntBASIC11.12□□□□□ -0.63
HSPG2P98160 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC11.12□□□□□ -0.63
HSPG2P98160 SRP9-204ENST00000619790 377 ntTSL 2 BASIC11.12□□□□□ -0.63
HSPG2P98160 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC11.11□□□□□ -0.63
HSPG2P98160 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
HSPG2P98160 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC11.11□□□□□ -0.63
HSPG2P98160 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
HSPG2P98160 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
HSPG2P98160 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC11.11□□□□□ -0.63
HSPG2P98160 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
HSPG2P98160 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC11.11□□□□□ -0.63
HSPG2P98160 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
HSPG2P98160 EDF1-203ENST00000371649 790 ntTSL 2 BASIC11.11□□□□□ -0.63
HSPG2P98160 MIR1909-201ENST00000411312 80 ntBASIC11.11□□□□□ -0.63
HSPG2P98160 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC11.11□□□□□ -0.63
HSPG2P98160 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
HSPG2P98160 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC11.11□□□□□ -0.63
HSPG2P98160 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC11.11□□□□□ -0.63
HSPG2P98160 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
HSPG2P98160 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
HSPG2P98160 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
HSPG2P98160 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
HSPG2P98160 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC11.11□□□□□ -0.63
HSPG2P98160 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
HSPG2P98160 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
HSPG2P98160 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
HSPG2P98160 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC11.11□□□□□ -0.63
HSPG2P98160 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
HSPG2P98160 GOLGA6L11P-201ENST00000417252 1298 ntBASIC11.11□□□□□ -0.63
HSPG2P98160 FAM58CP-201ENST00000435741 640 ntBASIC11.11□□□□□ -0.63
HSPG2P98160 AC074386.1-202ENST00000463561 864 ntBASIC11.11□□□□□ -0.63
HSPG2P98160 NOP2-211ENST00000540228 668 ntTSL 2 BASIC11.11□□□□□ -0.63
HSPG2P98160 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
HSPG2P98160 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
HSPG2P98160 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC11.11□□□□□ -0.63
HSPG2P98160 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
HSPG2P98160 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
HSPG2P98160 KRT18P65-201ENST00000439811 1286 ntBASIC11.11□□□□□ -0.63
HSPG2P98160 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC11.11□□□□□ -0.63
HSPG2P98160 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC11.11□□□□□ -0.63
HSPG2P98160 AC068137.2-201ENST00000605408 478 ntBASIC11.11□□□□□ -0.63
HSPG2P98160 SPTSSB-204ENST00000617024 1292 ntBASIC11.11□□□□□ -0.63
HSPG2P98160 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC11.1□□□□□ -0.63
HSPG2P98160 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
HSPG2P98160 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
HSPG2P98160 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC11.1□□□□□ -0.63
HSPG2P98160 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
HSPG2P98160 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
HSPG2P98160 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
HSPG2P98160 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC11.1□□□□□ -0.63
HSPG2P98160 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
HSPG2P98160 AC008667.4-201ENST00000607370 168 ntBASIC11.1□□□□□ -0.63
HSPG2P98160 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC11.1□□□□□ -0.63
HSPG2P98160 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
HSPG2P98160 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
HSPG2P98160 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC11.1□□□□□ -0.63
HSPG2P98160 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC11.1□□□□□ -0.63
HSPG2P98160 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
HSPG2P98160 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
HSPG2P98160 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
HSPG2P98160 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC11.1□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms