Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PKNOX1P55347 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PKNOX1P55347 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
PKNOX1P55347 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PKNOX1P55347 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PKNOX1P55347 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PKNOX1P55347 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PKNOX1P55347 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
PKNOX1P55347 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PKNOX1P55347 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
PKNOX1P55347 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PKNOX1P55347 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
PKNOX1P55347 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PKNOX1P55347 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PKNOX1P55347 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.76■□□□□ 0.43
PKNOX1P55347 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
PKNOX1P55347 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PKNOX1P55347 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PKNOX1P55347 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PKNOX1P55347 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.76■□□□□ 0.43
PKNOX1P55347 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PKNOX1P55347 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PKNOX1P55347 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC17.76■□□□□ 0.43
PKNOX1P55347 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
PKNOX1P55347 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PKNOX1P55347 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC17.76■□□□□ 0.43
PKNOX1P55347 BX088651.1-201ENST00000540551 451 ntBASIC17.76■□□□□ 0.43
PKNOX1P55347 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC17.76■□□□□ 0.43
PKNOX1P55347 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC17.76■□□□□ 0.43
PKNOX1P55347 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC17.76■□□□□ 0.43
PKNOX1P55347 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC17.76■□□□□ 0.43
PKNOX1P55347 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PKNOX1P55347 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
PKNOX1P55347 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PKNOX1P55347 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PKNOX1P55347 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PKNOX1P55347 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PKNOX1P55347 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PKNOX1P55347 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PKNOX1P55347 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PKNOX1P55347 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
PKNOX1P55347 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PKNOX1P55347 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PKNOX1P55347 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
PKNOX1P55347 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PKNOX1P55347 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
PKNOX1P55347 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PKNOX1P55347 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC17.75■□□□□ 0.43
PKNOX1P55347 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.75■□□□□ 0.43
PKNOX1P55347 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
PKNOX1P55347 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.75■□□□□ 0.43
PKNOX1P55347 AC092338.2-201ENST00000568827 1415 ntBASIC17.75■□□□□ 0.43
PKNOX1P55347 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PKNOX1P55347 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PKNOX1P55347 HIST1H2APS4-201ENST00000362070 348 ntBASIC17.75■□□□□ 0.43
PKNOX1P55347 PRR31-201ENST00000371629 978 ntTSL 2 BASIC17.75■□□□□ 0.43
PKNOX1P55347 MIR718-201ENST00000390190 70 ntBASIC17.75■□□□□ 0.43
PKNOX1P55347 PHB2-202ENST00000440277 996 ntTSL 5 BASIC17.75■□□□□ 0.43
PKNOX1P55347 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC17.75■□□□□ 0.43
PKNOX1P55347 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC17.75■□□□□ 0.43
PKNOX1P55347 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PKNOX1P55347 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC17.75■□□□□ 0.43
PKNOX1P55347 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC17.75■□□□□ 0.43
PKNOX1P55347 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC17.75■□□□□ 0.43
PKNOX1P55347 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC17.75■□□□□ 0.43
PKNOX1P55347 MIR3180-4-201ENST00000582223 153 ntBASIC17.75■□□□□ 0.43
PKNOX1P55347 MIR4785-201ENST00000585005 73 ntBASIC17.75■□□□□ 0.43
PKNOX1P55347 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
PKNOX1P55347 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PKNOX1P55347 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PKNOX1P55347 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PKNOX1P55347 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PKNOX1P55347 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.75■□□□□ 0.43
PKNOX1P55347 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
PKNOX1P55347 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC17.75■□□□□ 0.43
PKNOX1P55347 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
PKNOX1P55347 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
PKNOX1P55347 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PKNOX1P55347 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PKNOX1P55347 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
PKNOX1P55347 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
PKNOX1P55347 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
PKNOX1P55347 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.75■□□□□ 0.43
PKNOX1P55347 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PKNOX1P55347 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PKNOX1P55347 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PKNOX1P55347 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
PKNOX1P55347 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PKNOX1P55347 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.74■□□□□ 0.43
PKNOX1P55347 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PKNOX1P55347 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC17.74■□□□□ 0.43
PKNOX1P55347 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
PKNOX1P55347 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PKNOX1P55347 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.74■□□□□ 0.43
PKNOX1P55347 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PKNOX1P55347 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
PKNOX1P55347 AC093010.1-201ENST00000473625 1624 ntBASIC17.74■□□□□ 0.43
PKNOX1P55347 ILF2-202ENST00000368681 726 ntTSL 2 BASIC17.74■□□□□ 0.43
PKNOX1P55347 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC17.74■□□□□ 0.43
PKNOX1P55347 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms