Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SOX2P48431 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC15.95■□□□□ 0.14
SOX2P48431 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
SOX2P48431 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SOX2P48431 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC15.95■□□□□ 0.14
SOX2P48431 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
SOX2P48431 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
SOX2P48431 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SOX2P48431 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC15.95■□□□□ 0.14
SOX2P48431 FER1L4-210ENST00000615531 5998 ntBASIC15.95■□□□□ 0.14
SOX2P48431 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
SOX2P48431 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC15.95■□□□□ 0.14
SOX2P48431 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC15.95■□□□□ 0.14
SOX2P48431 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC15.95■□□□□ 0.14
SOX2P48431 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
SOX2P48431 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC15.95■□□□□ 0.14
SOX2P48431 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC15.95■□□□□ 0.14
SOX2P48431 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC15.95■□□□□ 0.14
SOX2P48431 AP000692.2-201ENST00000608391 879 ntBASIC15.95■□□□□ 0.14
SOX2P48431 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC15.95■□□□□ 0.14
SOX2P48431 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SOX2P48431 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
SOX2P48431 SP100-208ENST00000427101 1922 ntTSL 2 BASIC15.95■□□□□ 0.14
SOX2P48431 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SOX2P48431 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SOX2P48431 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SOX2P48431 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
SOX2P48431 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
SOX2P48431 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SOX2P48431 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
SOX2P48431 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
SOX2P48431 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
SOX2P48431 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SOX2P48431 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SOX2P48431 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
SOX2P48431 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SOX2P48431 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
SOX2P48431 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SOX2P48431 AC141586.5-201ENST00000624546 2050 ntBASIC15.95■□□□□ 0.14
SOX2P48431 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC15.94■□□□□ 0.14
SOX2P48431 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SOX2P48431 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SOX2P48431 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SOX2P48431 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
SOX2P48431 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SOX2P48431 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SOX2P48431 SDHAP2-201ENST00000455183 2001 ntBASIC15.94■□□□□ 0.14
SOX2P48431 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SOX2P48431 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SOX2P48431 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
SOX2P48431 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SOX2P48431 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC15.94■□□□□ 0.14
SOX2P48431 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC15.94■□□□□ 0.14
SOX2P48431 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC15.94■□□□□ 0.14
SOX2P48431 ADM-205ENST00000528544 586 ntTSL 2 BASIC15.94■□□□□ 0.14
SOX2P48431 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC15.94■□□□□ 0.14
SOX2P48431 EMC9-206ENST00000560403 872 ntTSL 2 BASIC15.94■□□□□ 0.14
SOX2P48431 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC15.94■□□□□ 0.14
SOX2P48431 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC15.94■□□□□ 0.14
SOX2P48431 UROS-202ENST00000368778 1556 ntTSL 2 BASIC15.94■□□□□ 0.14
SOX2P48431 AC006116.8-202ENST00000587620 1550 ntBASIC15.94■□□□□ 0.14
SOX2P48431 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SOX2P48431 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SOX2P48431 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SOX2P48431 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SOX2P48431 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SOX2P48431 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SOX2P48431 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SOX2P48431 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC15.94■□□□□ 0.14
SOX2P48431 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC15.94■□□□□ 0.14
SOX2P48431 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SOX2P48431 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SOX2P48431 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SOX2P48431 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SOX2P48431 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
SOX2P48431 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
SOX2P48431 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC15.93■□□□□ 0.14
SOX2P48431 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
SOX2P48431 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
SOX2P48431 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC15.93■□□□□ 0.14
SOX2P48431 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC15.93■□□□□ 0.14
SOX2P48431 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC15.93■□□□□ 0.14
SOX2P48431 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
SOX2P48431 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SOX2P48431 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC15.93■□□□□ 0.14
SOX2P48431 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SOX2P48431 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
SOX2P48431 FSCN1P1-201ENST00000568912 1481 ntBASIC15.93■□□□□ 0.14
SOX2P48431 AC009102.3-201ENST00000623118 1491 ntBASIC15.93■□□□□ 0.14
SOX2P48431 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
SOX2P48431 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC15.93■□□□□ 0.14
SOX2P48431 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SOX2P48431 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC15.93■□□□□ 0.14
SOX2P48431 MESTP1-201ENST00000404287 994 ntBASIC15.93■□□□□ 0.14
SOX2P48431 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC15.93■□□□□ 0.14
SOX2P48431 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC15.93■□□□□ 0.14
SOX2P48431 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SOX2P48431 AC128676.1-201ENST00000454392 318 ntBASIC15.93■□□□□ 0.14
SOX2P48431 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
SOX2P48431 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms