Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 CICP6-201ENST00000457191 2729 ntBASIC17.29■□□□□ 0.36
MSX2P35548 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
MSX2P35548 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
MSX2P35548 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC17.29■□□□□ 0.36
MSX2P35548 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
MSX2P35548 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.29■□□□□ 0.36
MSX2P35548 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
MSX2P35548 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC17.29■□□□□ 0.36
MSX2P35548 AC004980.1-204ENST00000429707 299 ntBASIC17.29■□□□□ 0.36
MSX2P35548 NCF1B-203ENST00000435988 1254 ntBASIC17.29■□□□□ 0.36
MSX2P35548 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
MSX2P35548 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
MSX2P35548 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC17.29■□□□□ 0.36
MSX2P35548 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC17.29■□□□□ 0.36
MSX2P35548 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC17.29■□□□□ 0.36
MSX2P35548 AL137784.2-201ENST00000607332 1000 ntBASIC17.29■□□□□ 0.36
MSX2P35548 AC008622.2-201ENST00000617006 1229 ntBASIC17.29■□□□□ 0.36
MSX2P35548 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC17.29■□□□□ 0.36
MSX2P35548 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
MSX2P35548 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
MSX2P35548 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.29■□□□□ 0.36
MSX2P35548 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
MSX2P35548 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
MSX2P35548 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.29■□□□□ 0.36
MSX2P35548 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
MSX2P35548 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC17.29■□□□□ 0.36
MSX2P35548 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC17.29■□□□□ 0.36
MSX2P35548 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
MSX2P35548 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
MSX2P35548 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC17.29■□□□□ 0.36
MSX2P35548 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
MSX2P35548 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.29■□□□□ 0.36
MSX2P35548 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
MSX2P35548 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
MSX2P35548 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC17.28■□□□□ 0.36
MSX2P35548 SDHAP2-201ENST00000455183 2001 ntBASIC17.28■□□□□ 0.36
MSX2P35548 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC17.28■□□□□ 0.36
MSX2P35548 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MSX2P35548 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
MSX2P35548 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MSX2P35548 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MSX2P35548 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
MSX2P35548 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MSX2P35548 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MSX2P35548 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MSX2P35548 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC17.28■□□□□ 0.36
MSX2P35548 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC17.28■□□□□ 0.36
MSX2P35548 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC17.28■□□□□ 0.36
MSX2P35548 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
MSX2P35548 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC17.28■□□□□ 0.36
MSX2P35548 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC17.28■□□□□ 0.36
MSX2P35548 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
MSX2P35548 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
MSX2P35548 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC17.28■□□□□ 0.36
MSX2P35548 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC17.28■□□□□ 0.36
MSX2P35548 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC17.28■□□□□ 0.36
MSX2P35548 AC131212.4-201ENST00000623606 975 ntBASIC17.28■□□□□ 0.36
MSX2P35548 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC17.28■□□□□ 0.36
MSX2P35548 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
MSX2P35548 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
MSX2P35548 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC17.28■□□□□ 0.36
MSX2P35548 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
MSX2P35548 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
MSX2P35548 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.28■□□□□ 0.36
MSX2P35548 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
MSX2P35548 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MSX2P35548 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
MSX2P35548 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MSX2P35548 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
MSX2P35548 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.28■□□□□ 0.36
MSX2P35548 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
MSX2P35548 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
MSX2P35548 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
MSX2P35548 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
MSX2P35548 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC17.27■□□□□ 0.36
MSX2P35548 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
MSX2P35548 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC17.27■□□□□ 0.36
MSX2P35548 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC17.27■□□□□ 0.36
MSX2P35548 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC17.27■□□□□ 0.36
MSX2P35548 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
MSX2P35548 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
MSX2P35548 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC17.27■□□□□ 0.36
MSX2P35548 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
MSX2P35548 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
MSX2P35548 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
MSX2P35548 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC17.27■□□□□ 0.36
MSX2P35548 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
MSX2P35548 MIR564-202ENST00000385049 94 ntBASIC17.27■□□□□ 0.36
MSX2P35548 MAP2K4P1-201ENST00000438453 1195 ntBASIC17.27■□□□□ 0.36
MSX2P35548 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC17.27■□□□□ 0.36
MSX2P35548 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
MSX2P35548 MTDHP1-201ENST00000605323 784 ntBASIC17.27■□□□□ 0.36
MSX2P35548 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC17.27■□□□□ 0.36
MSX2P35548 AL445675.2-201ENST00000620291 557 ntBASIC17.27■□□□□ 0.36
MSX2P35548 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
MSX2P35548 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
MSX2P35548 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
MSX2P35548 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC17.27■□□□□ 0.36
MSX2P35548 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
MSX2P35548 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms