Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC17.25■□□□□ 0.35
SDC1P18827 GPX4-207ENST00000589115 812 ntTSL 2 BASIC17.25■□□□□ 0.35
SDC1P18827 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC17.25■□□□□ 0.35
SDC1P18827 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
SDC1P18827 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SDC1P18827 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SDC1P18827 AC100803.2-201ENST00000562459 1963 ntBASIC17.25■□□□□ 0.35
SDC1P18827 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC17.25■□□□□ 0.35
SDC1P18827 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SDC1P18827 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SDC1P18827 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
SDC1P18827 HTR7P1-202ENST00000624664 4411 ntBASIC17.25■□□□□ 0.35
SDC1P18827 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SDC1P18827 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC17.25■□□□□ 0.35
SDC1P18827 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SDC1P18827 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SDC1P18827 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SDC1P18827 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SDC1P18827 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
SDC1P18827 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SDC1P18827 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
SDC1P18827 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
SDC1P18827 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SDC1P18827 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
SDC1P18827 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
SDC1P18827 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.24■□□□□ 0.35
SDC1P18827 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC17.24■□□□□ 0.35
SDC1P18827 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SDC1P18827 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SDC1P18827 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SDC1P18827 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.24■□□□□ 0.35
SDC1P18827 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SDC1P18827 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SDC1P18827 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SDC1P18827 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.24■□□□□ 0.35
SDC1P18827 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC17.24■□□□□ 0.35
SDC1P18827 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC17.24■□□□□ 0.35
SDC1P18827 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC17.24■□□□□ 0.35
SDC1P18827 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SDC1P18827 AL157888.1-201ENST00000631930 593 ntBASIC17.24■□□□□ 0.35
SDC1P18827 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
SDC1P18827 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC17.24■□□□□ 0.35
SDC1P18827 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SDC1P18827 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SDC1P18827 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.24■□□□□ 0.35
SDC1P18827 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
SDC1P18827 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
SDC1P18827 LINC01568-207ENST00000641790 1380 ntBASIC17.24■□□□□ 0.35
SDC1P18827 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
SDC1P18827 PBK-203ENST00000522944 1499 ntTSL 2 BASIC17.24■□□□□ 0.35
SDC1P18827 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SDC1P18827 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SDC1P18827 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SDC1P18827 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SDC1P18827 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
SDC1P18827 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SDC1P18827 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
SDC1P18827 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SDC1P18827 LINC00167-201ENST00000530583 1419 ntBASIC17.23■□□□□ 0.35
SDC1P18827 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SDC1P18827 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SDC1P18827 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SDC1P18827 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.23■□□□□ 0.35
SDC1P18827 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SDC1P18827 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SDC1P18827 AL596275.1-201ENST00000423464 877 ntBASIC17.23■□□□□ 0.35
SDC1P18827 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC17.23■□□□□ 0.35
SDC1P18827 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC17.23■□□□□ 0.35
SDC1P18827 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC17.23■□□□□ 0.35
SDC1P18827 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
SDC1P18827 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SDC1P18827 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SDC1P18827 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
SDC1P18827 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
SDC1P18827 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SDC1P18827 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SDC1P18827 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SDC1P18827 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.23■□□□□ 0.35
SDC1P18827 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SDC1P18827 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.22■□□□□ 0.35
SDC1P18827 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
SDC1P18827 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SDC1P18827 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.22■□□□□ 0.35
SDC1P18827 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SDC1P18827 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.22■□□□□ 0.35
SDC1P18827 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.22■□□□□ 0.35
SDC1P18827 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SDC1P18827 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC17.22■□□□□ 0.35
SDC1P18827 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC17.22■□□□□ 0.35
SDC1P18827 PVRIG2P-201ENST00000435460 978 ntBASIC17.22■□□□□ 0.35
SDC1P18827 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SDC1P18827 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC17.22■□□□□ 0.35
SDC1P18827 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC17.22■□□□□ 0.35
SDC1P18827 CLN6-221ENST00000637494 765 ntTSL 5 BASIC17.22■□□□□ 0.35
SDC1P18827 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SDC1P18827 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
SDC1P18827 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC17.22■□□□□ 0.35
SDC1P18827 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
SDC1P18827 AC020916.1-201ENST00000587762 1774 ntBASIC17.22■□□□□ 0.35
SDC1P18827 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms