Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC17.53■□□□□ 0.4
CLDN9O95484 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC17.53■□□□□ 0.4
CLDN9O95484 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.53■□□□□ 0.4
CLDN9O95484 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLDN9O95484 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CLDN9O95484 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
CLDN9O95484 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.52■□□□□ 0.4
CLDN9O95484 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
CLDN9O95484 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CLDN9O95484 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CLDN9O95484 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.52■□□□□ 0.4
CLDN9O95484 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
CLDN9O95484 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CLDN9O95484 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
CLDN9O95484 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CLDN9O95484 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CLDN9O95484 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
CLDN9O95484 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC17.52■□□□□ 0.4
CLDN9O95484 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC17.52■□□□□ 0.4
CLDN9O95484 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
CLDN9O95484 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC17.52■□□□□ 0.4
CLDN9O95484 DUT-205ENST00000558813 769 ntTSL 2 BASIC17.52■□□□□ 0.4
CLDN9O95484 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
CLDN9O95484 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC17.52■□□□□ 0.4
CLDN9O95484 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CLDN9O95484 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
CLDN9O95484 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CLDN9O95484 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CLDN9O95484 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
CLDN9O95484 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CLDN9O95484 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CLDN9O95484 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.39
CLDN9O95484 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CLDN9O95484 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CLDN9O95484 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CLDN9O95484 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CLDN9O95484 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.39
CLDN9O95484 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLDN9O95484 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC17.51■□□□□ 0.39
CLDN9O95484 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CLDN9O95484 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLDN9O95484 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLDN9O95484 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC17.51■□□□□ 0.39
CLDN9O95484 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
CLDN9O95484 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CLDN9O95484 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.51■□□□□ 0.39
CLDN9O95484 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CLDN9O95484 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
CLDN9O95484 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CLDN9O95484 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLDN9O95484 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLDN9O95484 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLDN9O95484 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLDN9O95484 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLDN9O95484 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLDN9O95484 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC17.51■□□□□ 0.39
CLDN9O95484 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC17.51■□□□□ 0.39
CLDN9O95484 SLC25A3P1-201ENST00000443844 931 ntBASIC17.51■□□□□ 0.39
CLDN9O95484 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLDN9O95484 DUTP2-201ENST00000519164 463 ntBASIC17.51■□□□□ 0.39
CLDN9O95484 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC17.51■□□□□ 0.39
CLDN9O95484 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
CLDN9O95484 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC17.51■□□□□ 0.39
CLDN9O95484 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
CLDN9O95484 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLDN9O95484 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLDN9O95484 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC17.51■□□□□ 0.39
CLDN9O95484 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLDN9O95484 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.51■□□□□ 0.39
CLDN9O95484 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
CLDN9O95484 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLDN9O95484 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLDN9O95484 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLDN9O95484 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLDN9O95484 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLDN9O95484 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC17.51■□□□□ 0.39
CLDN9O95484 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
CLDN9O95484 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
CLDN9O95484 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.51■□□□□ 0.39
CLDN9O95484 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLDN9O95484 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
CLDN9O95484 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.5■□□□□ 0.39
CLDN9O95484 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
CLDN9O95484 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLDN9O95484 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLDN9O95484 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLDN9O95484 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC17.5■□□□□ 0.39
CLDN9O95484 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLDN9O95484 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC17.5■□□□□ 0.39
CLDN9O95484 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLDN9O95484 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CLDN9O95484 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CLDN9O95484 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLDN9O95484 LIN28AP1-201ENST00000429574 405 ntBASIC17.5■□□□□ 0.39
CLDN9O95484 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC17.5■□□□□ 0.39
CLDN9O95484 GXYLT1P3-201ENST00000453058 1193 ntBASIC17.5■□□□□ 0.39
CLDN9O95484 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC17.5■□□□□ 0.39
CLDN9O95484 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC17.5■□□□□ 0.39
CLDN9O95484 AC034232.1-201ENST00000506026 1064 ntBASIC17.5■□□□□ 0.39
CLDN9O95484 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms