Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM13O60858 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM13O60858 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM13O60858 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC17.83■□□□□ 0.44
TRIM13O60858 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC17.83■□□□□ 0.44
TRIM13O60858 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM13O60858 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM13O60858 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17.83■□□□□ 0.44
TRIM13O60858 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC17.83■□□□□ 0.44
TRIM13O60858 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM13O60858 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM13O60858 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
TRIM13O60858 BANP-227ENST00000626016 2144 ntTSL 2 BASIC17.83■□□□□ 0.44
TRIM13O60858 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC17.83■□□□□ 0.44
TRIM13O60858 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM13O60858 PCDHA12-202ENST00000613593 2588 ntBASIC17.83■□□□□ 0.44
TRIM13O60858 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM13O60858 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.82■□□□□ 0.44
TRIM13O60858 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM13O60858 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM13O60858 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM13O60858 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM13O60858 AL024508.2-201ENST00000607749 1894 ntBASIC17.82■□□□□ 0.44
TRIM13O60858 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM13O60858 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
TRIM13O60858 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM13O60858 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
TRIM13O60858 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM13O60858 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM13O60858 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC17.82■□□□□ 0.44
TRIM13O60858 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.82■□□□□ 0.44
TRIM13O60858 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC17.82■□□□□ 0.44
TRIM13O60858 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC17.82■□□□□ 0.44
TRIM13O60858 GRAMD4P8-201ENST00000605465 1115 ntBASIC17.82■□□□□ 0.44
TRIM13O60858 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM13O60858 AL023806.1-201ENST00000603994 1649 ntBASIC17.82■□□□□ 0.44
TRIM13O60858 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
TRIM13O60858 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM13O60858 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM13O60858 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM13O60858 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM13O60858 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM13O60858 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.81■□□□□ 0.44
TRIM13O60858 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.81■□□□□ 0.44
TRIM13O60858 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM13O60858 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM13O60858 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM13O60858 PKD1P1-201ENST00000458669 6805 ntBASIC17.81■□□□□ 0.44
TRIM13O60858 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM13O60858 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM13O60858 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM13O60858 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM13O60858 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC17.81■□□□□ 0.44
TRIM13O60858 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM13O60858 DUTP2-201ENST00000519164 463 ntBASIC17.81■□□□□ 0.44
TRIM13O60858 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC17.81■□□□□ 0.44
TRIM13O60858 WWOX-216ENST00000569818 525 ntBASIC17.81■□□□□ 0.44
TRIM13O60858 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC17.81■□□□□ 0.44
TRIM13O60858 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM13O60858 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM13O60858 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM13O60858 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM13O60858 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.81■□□□□ 0.44
TRIM13O60858 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM13O60858 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC17.81■□□□□ 0.44
TRIM13O60858 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
TRIM13O60858 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC17.81■□□□□ 0.44
TRIM13O60858 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.81■□□□□ 0.44
TRIM13O60858 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.8■□□□□ 0.44
TRIM13O60858 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM13O60858 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
TRIM13O60858 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM13O60858 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM13O60858 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.8■□□□□ 0.44
TRIM13O60858 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC17.8■□□□□ 0.44
TRIM13O60858 AL355312.1-201ENST00000407115 2176 ntBASIC17.8■□□□□ 0.44
TRIM13O60858 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.8■□□□□ 0.44
TRIM13O60858 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
TRIM13O60858 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
TRIM13O60858 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM13O60858 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM13O60858 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
TRIM13O60858 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
TRIM13O60858 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC17.8■□□□□ 0.44
TRIM13O60858 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC17.8■□□□□ 0.44
TRIM13O60858 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM13O60858 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC17.8■□□□□ 0.44
TRIM13O60858 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC17.8■□□□□ 0.44
TRIM13O60858 MIR3180-4-201ENST00000582223 153 ntBASIC17.8■□□□□ 0.44
TRIM13O60858 REXO1L10P-201ENST00000615707 1290 ntBASIC17.8■□□□□ 0.44
TRIM13O60858 REXO1L12P-201ENST00000622156 912 ntBASIC17.8■□□□□ 0.44
TRIM13O60858 CR769767.2-201ENST00000622735 460 ntBASIC17.8■□□□□ 0.44
TRIM13O60858 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM13O60858 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM13O60858 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.8■□□□□ 0.44
TRIM13O60858 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.8■□□□□ 0.44
TRIM13O60858 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM13O60858 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM13O60858 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM13O60858 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 13.9 ms