Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC17.83■□□□□ 0.44
SNX3O60493 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC17.83■□□□□ 0.44
SNX3O60493 Six3os1_6.1-201ENST00000620790 196 ntBASIC17.83■□□□□ 0.44
SNX3O60493 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC17.83■□□□□ 0.44
SNX3O60493 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
SNX3O60493 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SNX3O60493 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SNX3O60493 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SNX3O60493 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
SNX3O60493 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SNX3O60493 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SNX3O60493 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC17.83■□□□□ 0.44
SNX3O60493 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
SNX3O60493 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SNX3O60493 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
SNX3O60493 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SNX3O60493 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
SNX3O60493 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SNX3O60493 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
SNX3O60493 KRT18P5-201ENST00000436075 1291 ntBASIC17.82■□□□□ 0.44
SNX3O60493 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC17.82■□□□□ 0.44
SNX3O60493 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC17.82■□□□□ 0.44
SNX3O60493 AC091874.3-201ENST00000512672 1195 ntBASIC17.82■□□□□ 0.44
SNX3O60493 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC17.82■□□□□ 0.44
SNX3O60493 PNMA6B-201ENST00000538162 1200 ntBASIC17.82■□□□□ 0.44
SNX3O60493 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SNX3O60493 KLF2-202ENST00000592003 564 ntTSL 3 BASIC17.82■□□□□ 0.44
SNX3O60493 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC17.82■□□□□ 0.44
SNX3O60493 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC17.82■□□□□ 0.44
SNX3O60493 AC092118.2-201ENST00000613495 667 ntBASIC17.82■□□□□ 0.44
SNX3O60493 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SNX3O60493 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SNX3O60493 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SNX3O60493 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SNX3O60493 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SNX3O60493 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.82■□□□□ 0.44
SNX3O60493 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SNX3O60493 LINC02199-201ENST00000506655 2702 ntBASIC17.82■□□□□ 0.44
SNX3O60493 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SNX3O60493 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.82■□□□□ 0.44
SNX3O60493 ABR-203ENST00000536794 2213 ntTSL 2 BASIC17.82■□□□□ 0.44
SNX3O60493 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SNX3O60493 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SNX3O60493 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC17.81■□□□□ 0.44
SNX3O60493 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC17.81■□□□□ 0.44
SNX3O60493 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
SNX3O60493 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
SNX3O60493 AL596257.1-201ENST00000641463 2694 ntBASIC17.81■□□□□ 0.44
SNX3O60493 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.81■□□□□ 0.44
SNX3O60493 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC17.81■□□□□ 0.44
SNX3O60493 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC17.81■□□□□ 0.44
SNX3O60493 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
SNX3O60493 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
SNX3O60493 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
SNX3O60493 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SNX3O60493 MIR638-201ENST00000385237 100 ntBASIC17.81■□□□□ 0.44
SNX3O60493 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC17.81■□□□□ 0.44
SNX3O60493 PTPA-216ENST00000432651 857 ntTSL 2 BASIC17.81■□□□□ 0.44
SNX3O60493 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
SNX3O60493 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SNX3O60493 GATS-209ENST00000454084 1030 ntTSL 3 BASIC17.81■□□□□ 0.44
SNX3O60493 LGR4-203ENST00000480977 492 ntTSL 2 BASIC17.81■□□□□ 0.44
SNX3O60493 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC17.81■□□□□ 0.44
SNX3O60493 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SNX3O60493 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC17.81■□□□□ 0.44
SNX3O60493 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC17.81■□□□□ 0.44
SNX3O60493 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC17.81■□□□□ 0.44
SNX3O60493 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
SNX3O60493 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC17.81■□□□□ 0.44
SNX3O60493 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SNX3O60493 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC17.81■□□□□ 0.44
SNX3O60493 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC17.81■□□□□ 0.44
SNX3O60493 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SNX3O60493 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SNX3O60493 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
SNX3O60493 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC17.81■□□□□ 0.44
SNX3O60493 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SNX3O60493 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
SNX3O60493 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC17.8■□□□□ 0.44
SNX3O60493 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SNX3O60493 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC17.8■□□□□ 0.44
SNX3O60493 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SNX3O60493 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SNX3O60493 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SNX3O60493 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SNX3O60493 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC17.8■□□□□ 0.44
SNX3O60493 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SNX3O60493 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC17.8■□□□□ 0.44
SNX3O60493 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC17.8■□□□□ 0.44
SNX3O60493 OR2A1-AS1-207ENST00000486094 819 ntBASIC17.8■□□□□ 0.44
SNX3O60493 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC17.8■□□□□ 0.44
SNX3O60493 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SNX3O60493 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SNX3O60493 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SNX3O60493 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
SNX3O60493 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SNX3O60493 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
SNX3O60493 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.8■□□□□ 0.44
SNX3O60493 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC17.8■□□□□ 0.44
SNX3O60493 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms