Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC30.75■■■□□ 2.51
CUX2O14529 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC30.75■■■□□ 2.51
CUX2O14529 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC30.75■■■□□ 2.51
CUX2O14529 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
CUX2O14529 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC30.75■■■□□ 2.51
CUX2O14529 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
CUX2O14529 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC30.75■■■□□ 2.51
CUX2O14529 NEK7-201ENST00000367383 586 ntTSL 2 BASIC30.75■■■□□ 2.51
CUX2O14529 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC30.75■■■□□ 2.51
CUX2O14529 CENPM-205ENST00000404067 905 ntTSL 3 BASIC30.75■■■□□ 2.51
CUX2O14529 NABP1-203ENST00000409510 843 ntTSL 5 BASIC30.75■■■□□ 2.51
CUX2O14529 AC004945.1-201ENST00000416738 983 ntBASIC30.75■■■□□ 2.51
CUX2O14529 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC30.75■■■□□ 2.51
CUX2O14529 AC096734.2-201ENST00000562054 433 ntBASIC30.75■■■□□ 2.51
CUX2O14529 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC30.75■■■□□ 2.51
CUX2O14529 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
CUX2O14529 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC30.75■■■□□ 2.51
CUX2O14529 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
CUX2O14529 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
CUX2O14529 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC30.74■■■□□ 2.51
CUX2O14529 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
CUX2O14529 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC30.74■■■□□ 2.51
CUX2O14529 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
CUX2O14529 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC30.74■■■□□ 2.51
CUX2O14529 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
CUX2O14529 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC30.74■■■□□ 2.51
CUX2O14529 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
CUX2O14529 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC30.74■■■□□ 2.51
CUX2O14529 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
CUX2O14529 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC30.74■■■□□ 2.51
CUX2O14529 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
CUX2O14529 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC30.73■■■□□ 2.51
CUX2O14529 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC30.73■■■□□ 2.51
CUX2O14529 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
CUX2O14529 NOP2-211ENST00000540228 668 ntTSL 2 BASIC30.73■■■□□ 2.51
CUX2O14529 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC30.73■■■□□ 2.51
CUX2O14529 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC30.73■■■□□ 2.51
CUX2O14529 REXO1L3P-201ENST00000622202 1288 ntBASIC30.73■■■□□ 2.51
CUX2O14529 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC30.73■■■□□ 2.51
CUX2O14529 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
CUX2O14529 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
CUX2O14529 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC30.73■■■□□ 2.51
CUX2O14529 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
CUX2O14529 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC30.73■■■□□ 2.51
CUX2O14529 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
CUX2O14529 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC30.72■■■□□ 2.51
CUX2O14529 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC30.72■■■□□ 2.51
CUX2O14529 GPR53P-205ENST00000457298 1084 ntBASIC30.72■■■□□ 2.51
CUX2O14529 AC074386.1-202ENST00000463561 864 ntBASIC30.72■■■□□ 2.51
CUX2O14529 ARTN-206ENST00000472435 402 ntTSL 3 BASIC30.72■■■□□ 2.51
CUX2O14529 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC30.72■■■□□ 2.51
CUX2O14529 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC30.72■■■□□ 2.51
CUX2O14529 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC30.72■■■□□ 2.51
CUX2O14529 PMPCAP1-201ENST00000508114 1576 ntBASIC30.72■■■□□ 2.51
CUX2O14529 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
CUX2O14529 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC30.72■■■□□ 2.51
CUX2O14529 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC30.71■■■□□ 2.51
CUX2O14529 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
CUX2O14529 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
CUX2O14529 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
CUX2O14529 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
CUX2O14529 HNRNPFP1-201ENST00000391730 1133 ntBASIC30.71■■■□□ 2.51
CUX2O14529 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC30.71■■■□□ 2.51
CUX2O14529 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
CUX2O14529 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC30.71■■■□□ 2.51
CUX2O14529 POLD4-207ENST00000531239 584 ntTSL 2 BASIC30.71■■■□□ 2.51
CUX2O14529 IFT20-216ENST00000588477 774 ntTSL 5 BASIC30.71■■■□□ 2.51
CUX2O14529 AC006504.4-201ENST00000592118 1568 ntBASIC30.71■■■□□ 2.51
CUX2O14529 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
CUX2O14529 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC30.71■■■□□ 2.51
CUX2O14529 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC30.71■■■□□ 2.51
CUX2O14529 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC30.71■■■□□ 2.51
CUX2O14529 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC30.7■■■□□ 2.51
CUX2O14529 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC30.7■■■□□ 2.51
CUX2O14529 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
CUX2O14529 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC30.7■■■□□ 2.51
CUX2O14529 CD9-202ENST00000382515 1229 ntTSL 5 BASIC30.7■■■□□ 2.51
CUX2O14529 DDX43P3-201ENST00000441064 443 ntBASIC30.7■■■□□ 2.51
CUX2O14529 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC30.7■■■□□ 2.51
CUX2O14529 KRT18P41-201ENST00000518924 1277 ntBASIC30.7■■■□□ 2.51
CUX2O14529 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC30.7■■■□□ 2.51
CUX2O14529 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC30.7■■■□□ 2.51
CUX2O14529 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
CUX2O14529 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
CUX2O14529 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
CUX2O14529 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
CUX2O14529 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
CUX2O14529 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
CUX2O14529 FP475955.4-201ENST00000623131 1990 ntBASIC30.7■■■□□ 2.5
CUX2O14529 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC30.7■■■□□ 2.5
CUX2O14529 EFS-203ENST00000429593 2610 ntTSL 2 BASIC30.7■■■□□ 2.5
CUX2O14529 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC30.7■■■□□ 2.5
CUX2O14529 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC30.7■■■□□ 2.5
CUX2O14529 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC30.7■■■□□ 2.5
CUX2O14529 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC30.7■■■□□ 2.5
CUX2O14529 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC30.7■■■□□ 2.5
CUX2O14529 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC30.7■■■□□ 2.5
CUX2O14529 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC30.7■■■□□ 2.5
CUX2O14529 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
CUX2O14529 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms