Protein–RNA interactions for Protein: P03905

MT-ND4, NADH-ubiquinone oxidoreductase chain 4, humanhuman

Predictions only

Length 459 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND4P03905 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC21.35■■□□□ 1.01
MT-ND4P03905 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
MT-ND4P03905 AC092803.2-201ENST00000564287 1899 ntBASIC21.35■■□□□ 1.01
MT-ND4P03905 MIR3665-201ENST00000578708 105 ntBASIC21.34■■□□□ 1.01
MT-ND4P03905 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
MT-ND4P03905 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
MT-ND4P03905 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
MT-ND4P03905 MIR6090-201ENST00000622481 60 ntBASIC21.33■■□□□ 1.01
MT-ND4P03905 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1
MT-ND4P03905 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
MT-ND4P03905 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
MT-ND4P03905 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
MT-ND4P03905 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
MT-ND4P03905 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC21.32■■□□□ 1
MT-ND4P03905 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC21.32■■□□□ 1
MT-ND4P03905 THRA-202ENST00000394121 2260 ntTSL 2 BASIC21.32■■□□□ 1
MT-ND4P03905 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
MT-ND4P03905 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
MT-ND4P03905 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
MT-ND4P03905 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
MT-ND4P03905 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
MT-ND4P03905 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
MT-ND4P03905 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
MT-ND4P03905 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
MT-ND4P03905 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
MT-ND4P03905 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
MT-ND4P03905 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
MT-ND4P03905 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC21.3■■□□□ 1
MT-ND4P03905 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
MT-ND4P03905 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC21.3■■□□□ 1
MT-ND4P03905 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
MT-ND4P03905 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
MT-ND4P03905 CEBPA-AS1-201ENST00000592982 2198 ntBASIC21.3■■□□□ 1
MT-ND4P03905 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
MT-ND4P03905 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
MT-ND4P03905 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC21.29■■□□□ 1
MT-ND4P03905 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC21.29■■□□□ 1
MT-ND4P03905 AP006261.1-201ENST00000584783 668 ntBASIC21.29■■□□□ 1
MT-ND4P03905 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
MT-ND4P03905 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MT-ND4P03905 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC21.28■■□□□ 1
MT-ND4P03905 AC135983.2-203ENST00000454486 1613 ntBASIC21.28■■□□□ 1
MT-ND4P03905 EI24-212ENST00000615917 1407 ntTSL 2 BASIC21.28■■□□□ 1
MT-ND4P03905 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC21.28■■□□□ 1
MT-ND4P03905 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC21.27■■□□□ 1
MT-ND4P03905 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
MT-ND4P03905 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
MT-ND4P03905 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC21.27■■□□□ 1
MT-ND4P03905 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
MT-ND4P03905 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
MT-ND4P03905 MEST-211ENST00000437945 1455 ntTSL 5 BASIC21.26■□□□□ 0.99
MT-ND4P03905 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
MT-ND4P03905 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC21.26■□□□□ 0.99
MT-ND4P03905 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MT-ND4P03905 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MT-ND4P03905 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC21.25■□□□□ 0.99
MT-ND4P03905 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
MT-ND4P03905 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC21.24■□□□□ 0.99
MT-ND4P03905 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC21.24■□□□□ 0.99
MT-ND4P03905 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
MT-ND4P03905 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
MT-ND4P03905 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
MT-ND4P03905 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
MT-ND4P03905 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC21.23■□□□□ 0.99
MT-ND4P03905 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MT-ND4P03905 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MT-ND4P03905 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
MT-ND4P03905 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MT-ND4P03905 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC21.23■□□□□ 0.99
MT-ND4P03905 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
MT-ND4P03905 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
MT-ND4P03905 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
MT-ND4P03905 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC21.22■□□□□ 0.99
MT-ND4P03905 AC018358.1-201ENST00000631079 1402 ntBASIC21.22■□□□□ 0.99
MT-ND4P03905 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
MT-ND4P03905 WHAMMP2-203ENST00000563942 1603 ntBASIC21.22■□□□□ 0.99
MT-ND4P03905 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MT-ND4P03905 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
MT-ND4P03905 LINC00273-201ENST00000539813 1452 ntBASIC21.21■□□□□ 0.99
MT-ND4P03905 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
MT-ND4P03905 RARA-203ENST00000394086 2008 ntTSL 2 BASIC21.21■□□□□ 0.99
MT-ND4P03905 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MT-ND4P03905 ERN1-208ENST00000606895 2068 ntBASIC21.21■□□□□ 0.99
MT-ND4P03905 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
MT-ND4P03905 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MT-ND4P03905 NRG1-221ENST00000614767 762 ntTSL 5 BASIC21.21■□□□□ 0.99
MT-ND4P03905 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MT-ND4P03905 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MT-ND4P03905 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
MT-ND4P03905 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
MT-ND4P03905 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MT-ND4P03905 AC087741.3-201ENST00000624270 1347 ntBASIC21.2■□□□□ 0.98
MT-ND4P03905 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
MT-ND4P03905 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC21.2■□□□□ 0.98
MT-ND4P03905 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MT-ND4P03905 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
MT-ND4P03905 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC21.2■□□□□ 0.98
MT-ND4P03905 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MT-ND4P03905 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MT-ND4P03905 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms