Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CTDP1Q9Y5B0 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CTDP1Q9Y5B0 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
CTDP1Q9Y5B0 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC20.92■□□□□ 0.94
CTDP1Q9Y5B0 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CTDP1Q9Y5B0 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CTDP1Q9Y5B0 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CTDP1Q9Y5B0 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CTDP1Q9Y5B0 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
CTDP1Q9Y5B0 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CTDP1Q9Y5B0 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CTDP1Q9Y5B0 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC20.92■□□□□ 0.94
CTDP1Q9Y5B0 AC068472.1-201ENST00000474589 881 ntBASIC20.92■□□□□ 0.94
CTDP1Q9Y5B0 AC079776.4-201ENST00000511039 504 ntBASIC20.92■□□□□ 0.94
CTDP1Q9Y5B0 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC20.92■□□□□ 0.94
CTDP1Q9Y5B0 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
CTDP1Q9Y5B0 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
CTDP1Q9Y5B0 AC009154.2-201ENST00000621177 724 ntBASIC20.92■□□□□ 0.94
CTDP1Q9Y5B0 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
CTDP1Q9Y5B0 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CTDP1Q9Y5B0 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CTDP1Q9Y5B0 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CTDP1Q9Y5B0 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CTDP1Q9Y5B0 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC20.92■□□□□ 0.94
CTDP1Q9Y5B0 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CTDP1Q9Y5B0 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CTDP1Q9Y5B0 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC20.92■□□□□ 0.94
CTDP1Q9Y5B0 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC20.92■□□□□ 0.94
CTDP1Q9Y5B0 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC20.92■□□□□ 0.94
CTDP1Q9Y5B0 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CTDP1Q9Y5B0 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC20.92■□□□□ 0.94
CTDP1Q9Y5B0 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CTDP1Q9Y5B0 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CTDP1Q9Y5B0 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC20.91■□□□□ 0.94
CTDP1Q9Y5B0 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC20.91■□□□□ 0.94
CTDP1Q9Y5B0 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CTDP1Q9Y5B0 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CTDP1Q9Y5B0 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CTDP1Q9Y5B0 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
CTDP1Q9Y5B0 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CTDP1Q9Y5B0 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC20.91■□□□□ 0.94
CTDP1Q9Y5B0 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC20.91■□□□□ 0.94
CTDP1Q9Y5B0 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC20.91■□□□□ 0.94
CTDP1Q9Y5B0 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CTDP1Q9Y5B0 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC20.91■□□□□ 0.94
CTDP1Q9Y5B0 AL662844.1-201ENST00000546340 181 ntBASIC20.91■□□□□ 0.94
CTDP1Q9Y5B0 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC20.91■□□□□ 0.94
CTDP1Q9Y5B0 COX5A-204ENST00000567270 579 ntTSL 3 BASIC20.91■□□□□ 0.94
CTDP1Q9Y5B0 MIR5100-201ENST00000579544 119 ntBASIC20.91■□□□□ 0.94
CTDP1Q9Y5B0 BNIP3P18-201ENST00000593976 575 ntBASIC20.91■□□□□ 0.94
CTDP1Q9Y5B0 CALM3-211ENST00000598871 561 ntTSL 4 BASIC20.91■□□□□ 0.94
CTDP1Q9Y5B0 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC20.91■□□□□ 0.94
CTDP1Q9Y5B0 AC104692.2-201ENST00000603054 253 ntBASIC20.91■□□□□ 0.94
CTDP1Q9Y5B0 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CTDP1Q9Y5B0 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CTDP1Q9Y5B0 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CTDP1Q9Y5B0 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CTDP1Q9Y5B0 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
CTDP1Q9Y5B0 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC20.9■□□□□ 0.94
CTDP1Q9Y5B0 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
CTDP1Q9Y5B0 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CTDP1Q9Y5B0 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CTDP1Q9Y5B0 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CTDP1Q9Y5B0 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
CTDP1Q9Y5B0 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
CTDP1Q9Y5B0 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
CTDP1Q9Y5B0 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC20.9■□□□□ 0.94
CTDP1Q9Y5B0 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CTDP1Q9Y5B0 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CTDP1Q9Y5B0 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC20.9■□□□□ 0.94
CTDP1Q9Y5B0 LSM5-204ENST00000409909 740 ntTSL 2 BASIC20.9■□□□□ 0.94
CTDP1Q9Y5B0 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CTDP1Q9Y5B0 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC20.9■□□□□ 0.94
CTDP1Q9Y5B0 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC20.9■□□□□ 0.94
CTDP1Q9Y5B0 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC20.9■□□□□ 0.94
CTDP1Q9Y5B0 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC20.9■□□□□ 0.94
CTDP1Q9Y5B0 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CTDP1Q9Y5B0 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CTDP1Q9Y5B0 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CTDP1Q9Y5B0 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
CTDP1Q9Y5B0 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CTDP1Q9Y5B0 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CTDP1Q9Y5B0 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC20.9■□□□□ 0.94
CTDP1Q9Y5B0 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CTDP1Q9Y5B0 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC20.9■□□□□ 0.94
CTDP1Q9Y5B0 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CTDP1Q9Y5B0 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CTDP1Q9Y5B0 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20.9■□□□□ 0.94
CTDP1Q9Y5B0 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC20.9■□□□□ 0.94
CTDP1Q9Y5B0 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CTDP1Q9Y5B0 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
CTDP1Q9Y5B0 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
CTDP1Q9Y5B0 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CTDP1Q9Y5B0 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CTDP1Q9Y5B0 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.94
CTDP1Q9Y5B0 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
CTDP1Q9Y5B0 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC20.89■□□□□ 0.94
CTDP1Q9Y5B0 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CTDP1Q9Y5B0 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
CTDP1Q9Y5B0 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms