Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC16.96■□□□□ 0.31
VCX3AQ9NNX9 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC16.96■□□□□ 0.31
VCX3AQ9NNX9 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VCX3AQ9NNX9 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VCX3AQ9NNX9 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VCX3AQ9NNX9 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
VCX3AQ9NNX9 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VCX3AQ9NNX9 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC16.96■□□□□ 0.31
VCX3AQ9NNX9 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC16.96■□□□□ 0.31
VCX3AQ9NNX9 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC16.96■□□□□ 0.31
VCX3AQ9NNX9 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC16.96■□□□□ 0.31
VCX3AQ9NNX9 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
VCX3AQ9NNX9 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC16.96■□□□□ 0.31
VCX3AQ9NNX9 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
VCX3AQ9NNX9 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC16.96■□□□□ 0.31
VCX3AQ9NNX9 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VCX3AQ9NNX9 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
VCX3AQ9NNX9 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
VCX3AQ9NNX9 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
VCX3AQ9NNX9 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.96■□□□□ 0.31
VCX3AQ9NNX9 AC023824.1-201ENST00000562945 2975 ntBASIC16.96■□□□□ 0.31
VCX3AQ9NNX9 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
VCX3AQ9NNX9 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC16.96■□□□□ 0.31
VCX3AQ9NNX9 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
VCX3AQ9NNX9 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
VCX3AQ9NNX9 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.3
VCX3AQ9NNX9 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
VCX3AQ9NNX9 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16.96■□□□□ 0.3
VCX3AQ9NNX9 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC16.96■□□□□ 0.3
VCX3AQ9NNX9 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
VCX3AQ9NNX9 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
VCX3AQ9NNX9 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
VCX3AQ9NNX9 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC16.95■□□□□ 0.3
VCX3AQ9NNX9 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
VCX3AQ9NNX9 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.95■□□□□ 0.3
VCX3AQ9NNX9 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC16.95■□□□□ 0.3
VCX3AQ9NNX9 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VCX3AQ9NNX9 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VCX3AQ9NNX9 GCK-205ENST00000437084 1385 ntTSL 5 BASIC16.95■□□□□ 0.3
VCX3AQ9NNX9 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC16.95■□□□□ 0.3
VCX3AQ9NNX9 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC16.95■□□□□ 0.3
VCX3AQ9NNX9 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC16.95■□□□□ 0.3
VCX3AQ9NNX9 AP001330.3-201ENST00000520123 633 ntBASIC16.95■□□□□ 0.3
VCX3AQ9NNX9 MIR6084-201ENST00000622012 110 ntBASIC16.95■□□□□ 0.3
VCX3AQ9NNX9 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VCX3AQ9NNX9 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
VCX3AQ9NNX9 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.95■□□□□ 0.3
VCX3AQ9NNX9 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VCX3AQ9NNX9 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VCX3AQ9NNX9 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC16.95■□□□□ 0.3
VCX3AQ9NNX9 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.95■□□□□ 0.3
VCX3AQ9NNX9 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VCX3AQ9NNX9 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
VCX3AQ9NNX9 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VCX3AQ9NNX9 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
VCX3AQ9NNX9 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VCX3AQ9NNX9 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC16.94■□□□□ 0.3
VCX3AQ9NNX9 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VCX3AQ9NNX9 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
VCX3AQ9NNX9 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VCX3AQ9NNX9 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC16.94■□□□□ 0.3
VCX3AQ9NNX9 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VCX3AQ9NNX9 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VCX3AQ9NNX9 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC16.94■□□□□ 0.3
VCX3AQ9NNX9 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC16.94■□□□□ 0.3
VCX3AQ9NNX9 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VCX3AQ9NNX9 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VCX3AQ9NNX9 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VCX3AQ9NNX9 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VCX3AQ9NNX9 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
VCX3AQ9NNX9 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VCX3AQ9NNX9 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
VCX3AQ9NNX9 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VCX3AQ9NNX9 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VCX3AQ9NNX9 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VCX3AQ9NNX9 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
VCX3AQ9NNX9 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC16.94■□□□□ 0.3
VCX3AQ9NNX9 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC16.94■□□□□ 0.3
VCX3AQ9NNX9 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC16.94■□□□□ 0.3
VCX3AQ9NNX9 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC16.94■□□□□ 0.3
VCX3AQ9NNX9 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
VCX3AQ9NNX9 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
VCX3AQ9NNX9 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
VCX3AQ9NNX9 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VCX3AQ9NNX9 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VCX3AQ9NNX9 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VCX3AQ9NNX9 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VCX3AQ9NNX9 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
VCX3AQ9NNX9 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
VCX3AQ9NNX9 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC16.94■□□□□ 0.3
VCX3AQ9NNX9 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
VCX3AQ9NNX9 AC112777.1-201ENST00000540175 1423 ntBASIC16.94■□□□□ 0.3
VCX3AQ9NNX9 AC126755.1-201ENST00000525846 6405 ntBASIC16.94■□□□□ 0.3
VCX3AQ9NNX9 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC16.94■□□□□ 0.3
VCX3AQ9NNX9 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VCX3AQ9NNX9 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VCX3AQ9NNX9 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC16.93■□□□□ 0.3
VCX3AQ9NNX9 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VCX3AQ9NNX9 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
VCX3AQ9NNX9 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms