Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
CHMP1AQ9HD42 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CHMP1AQ9HD42 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC15.64■□□□□ 0.09
CHMP1AQ9HD42 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC15.64■□□□□ 0.09
CHMP1AQ9HD42 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC15.64■□□□□ 0.09
CHMP1AQ9HD42 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CHMP1AQ9HD42 PCDHA12-202ENST00000613593 2588 ntBASIC15.64■□□□□ 0.09
CHMP1AQ9HD42 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
CHMP1AQ9HD42 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CHMP1AQ9HD42 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 KRT8P45-201ENST00000414328 1447 ntBASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 PPP1R14BP5-201ENST00000440334 435 ntBASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 FAM207BP-201ENST00000447172 505 ntBASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 C1QBPP2-201ENST00000528754 825 ntBASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 AC073648.6-201ENST00000641589 218 ntBASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
CHMP1AQ9HD42 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CHMP1AQ9HD42 AC135776.1-201ENST00000319817 2481 ntBASIC15.62■□□□□ 0.09
CHMP1AQ9HD42 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CHMP1AQ9HD42 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CHMP1AQ9HD42 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CHMP1AQ9HD42 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC15.62■□□□□ 0.09
CHMP1AQ9HD42 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
CHMP1AQ9HD42 AC124067.4-201ENST00000519691 2379 ntBASIC15.62■□□□□ 0.09
CHMP1AQ9HD42 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
CHMP1AQ9HD42 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC15.62■□□□□ 0.09
CHMP1AQ9HD42 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CHMP1AQ9HD42 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC15.62■□□□□ 0.09
CHMP1AQ9HD42 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC15.62■□□□□ 0.09
CHMP1AQ9HD42 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC15.62■□□□□ 0.09
CHMP1AQ9HD42 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
CHMP1AQ9HD42 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC15.62■□□□□ 0.09
CHMP1AQ9HD42 EMC9-206ENST00000560403 872 ntTSL 2 BASIC15.62■□□□□ 0.09
CHMP1AQ9HD42 AL353708.3-201ENST00000610272 989 ntBASIC15.62■□□□□ 0.09
CHMP1AQ9HD42 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC15.62■□□□□ 0.09
CHMP1AQ9HD42 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
CHMP1AQ9HD42 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC15.62■□□□□ 0.09
CHMP1AQ9HD42 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC15.62■□□□□ 0.09
CHMP1AQ9HD42 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CHMP1AQ9HD42 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CHMP1AQ9HD42 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC15.62■□□□□ 0.09
CHMP1AQ9HD42 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC15.62■□□□□ 0.09
CHMP1AQ9HD42 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CHMP1AQ9HD42 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
CHMP1AQ9HD42 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CHMP1AQ9HD42 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
CHMP1AQ9HD42 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC15.62■□□□□ 0.09
CHMP1AQ9HD42 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CHMP1AQ9HD42 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CHMP1AQ9HD42 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CHMP1AQ9HD42 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CHMP1AQ9HD42 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CHMP1AQ9HD42 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CHMP1AQ9HD42 AC012317.2-201ENST00000623305 2251 ntBASIC15.61■□□□□ 0.09
CHMP1AQ9HD42 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CHMP1AQ9HD42 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CHMP1AQ9HD42 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CHMP1AQ9HD42 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC15.61■□□□□ 0.09
CHMP1AQ9HD42 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
CHMP1AQ9HD42 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
CHMP1AQ9HD42 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CHMP1AQ9HD42 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CHMP1AQ9HD42 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms