Protein–RNA interactions for Protein: Q9C0I3

CCSER1, Serine-rich coiled-coil domain-containing protein 1, humanhuman

Predictions only

Length 900 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCSER1Q9C0I3 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCSER1Q9C0I3 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC20.28■□□□□ 0.84
CCSER1Q9C0I3 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC20.28■□□□□ 0.84
CCSER1Q9C0I3 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC20.28■□□□□ 0.84
CCSER1Q9C0I3 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC20.28■□□□□ 0.84
CCSER1Q9C0I3 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC20.28■□□□□ 0.84
CCSER1Q9C0I3 GXYLT1P4-201ENST00000613576 1192 ntBASIC20.28■□□□□ 0.84
CCSER1Q9C0I3 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCSER1Q9C0I3 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCSER1Q9C0I3 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCSER1Q9C0I3 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCSER1Q9C0I3 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
CCSER1Q9C0I3 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCSER1Q9C0I3 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCSER1Q9C0I3 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCSER1Q9C0I3 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCSER1Q9C0I3 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC20.27■□□□□ 0.84
CCSER1Q9C0I3 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCSER1Q9C0I3 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCSER1Q9C0I3 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCSER1Q9C0I3 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCSER1Q9C0I3 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCSER1Q9C0I3 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCSER1Q9C0I3 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCSER1Q9C0I3 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCSER1Q9C0I3 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCSER1Q9C0I3 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCSER1Q9C0I3 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCSER1Q9C0I3 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC20.27■□□□□ 0.84
CCSER1Q9C0I3 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC20.27■□□□□ 0.84
CCSER1Q9C0I3 KRT18P65-201ENST00000439811 1286 ntBASIC20.27■□□□□ 0.84
CCSER1Q9C0I3 DUX4L26-201ENST00000489078 1255 ntBASIC20.27■□□□□ 0.84
CCSER1Q9C0I3 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC20.27■□□□□ 0.84
CCSER1Q9C0I3 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC20.27■□□□□ 0.84
CCSER1Q9C0I3 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC20.27■□□□□ 0.84
CCSER1Q9C0I3 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCSER1Q9C0I3 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCSER1Q9C0I3 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC20.27■□□□□ 0.84
CCSER1Q9C0I3 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC20.27■□□□□ 0.83
CCSER1Q9C0I3 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CCSER1Q9C0I3 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC20.27■□□□□ 0.83
CCSER1Q9C0I3 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CCSER1Q9C0I3 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CCSER1Q9C0I3 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCSER1Q9C0I3 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCSER1Q9C0I3 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
CCSER1Q9C0I3 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
CCSER1Q9C0I3 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
CCSER1Q9C0I3 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC20.26■□□□□ 0.83
CCSER1Q9C0I3 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC20.26■□□□□ 0.83
CCSER1Q9C0I3 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
CCSER1Q9C0I3 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCSER1Q9C0I3 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCSER1Q9C0I3 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
CCSER1Q9C0I3 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC20.26■□□□□ 0.83
CCSER1Q9C0I3 MIR1224-201ENST00000408193 85 ntBASIC20.26■□□□□ 0.83
CCSER1Q9C0I3 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC20.26■□□□□ 0.83
CCSER1Q9C0I3 AC092647.4-201ENST00000457211 535 ntBASIC20.26■□□□□ 0.83
CCSER1Q9C0I3 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC20.26■□□□□ 0.83
CCSER1Q9C0I3 AC022616.7-201ENST00000525383 220 ntBASIC20.26■□□□□ 0.83
CCSER1Q9C0I3 PPOX-214ENST00000535223 664 ntTSL 3 BASIC20.26■□□□□ 0.83
CCSER1Q9C0I3 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC20.26■□□□□ 0.83
CCSER1Q9C0I3 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC20.26■□□□□ 0.83
CCSER1Q9C0I3 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC20.26■□□□□ 0.83
CCSER1Q9C0I3 AC010331.1-201ENST00000611423 582 ntBASIC20.26■□□□□ 0.83
CCSER1Q9C0I3 SPEG-225ENST00000617028 815 ntTSL 5 BASIC20.26■□□□□ 0.83
CCSER1Q9C0I3 AC004263.2-201ENST00000617183 678 ntBASIC20.26■□□□□ 0.83
CCSER1Q9C0I3 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC20.26■□□□□ 0.83
CCSER1Q9C0I3 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC20.26■□□□□ 0.83
CCSER1Q9C0I3 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCSER1Q9C0I3 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCSER1Q9C0I3 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC20.26■□□□□ 0.83
CCSER1Q9C0I3 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC20.26■□□□□ 0.83
CCSER1Q9C0I3 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
CCSER1Q9C0I3 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCSER1Q9C0I3 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCSER1Q9C0I3 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCSER1Q9C0I3 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
CCSER1Q9C0I3 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCSER1Q9C0I3 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
CCSER1Q9C0I3 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
CCSER1Q9C0I3 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCSER1Q9C0I3 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCSER1Q9C0I3 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCSER1Q9C0I3 AC100803.2-201ENST00000562459 1963 ntBASIC20.25■□□□□ 0.83
CCSER1Q9C0I3 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCSER1Q9C0I3 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC20.25■□□□□ 0.83
CCSER1Q9C0I3 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC20.25■□□□□ 0.83
CCSER1Q9C0I3 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC20.25■□□□□ 0.83
CCSER1Q9C0I3 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
CCSER1Q9C0I3 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
CCSER1Q9C0I3 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCSER1Q9C0I3 IGHGP-201ENST00000390555 1178 ntBASIC20.25■□□□□ 0.83
CCSER1Q9C0I3 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC20.25■□□□□ 0.83
CCSER1Q9C0I3 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCSER1Q9C0I3 SPDYE13P-201ENST00000445314 798 ntBASIC20.25■□□□□ 0.83
CCSER1Q9C0I3 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC20.25■□□□□ 0.83
CCSER1Q9C0I3 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC20.25■□□□□ 0.83
CCSER1Q9C0I3 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC20.25■□□□□ 0.83
CCSER1Q9C0I3 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms