Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
CCDC28BQ9BUN5 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC28BQ9BUN5 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC28BQ9BUN5 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC28BQ9BUN5 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC28BQ9BUN5 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC28BQ9BUN5 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
CCDC28BQ9BUN5 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC28BQ9BUN5 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC28BQ9BUN5 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC17.65■□□□□ 0.42
CCDC28BQ9BUN5 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC28BQ9BUN5 FDX2-207ENST00000494368 584 ntTSL 4 BASIC17.65■□□□□ 0.42
CCDC28BQ9BUN5 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC28BQ9BUN5 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC17.65■□□□□ 0.42
CCDC28BQ9BUN5 CR392000.1-201ENST00000624770 1228 ntBASIC17.65■□□□□ 0.42
CCDC28BQ9BUN5 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC17.65■□□□□ 0.42
CCDC28BQ9BUN5 CABP2-204ENST00000636477 941 ntTSL 5 BASIC17.65■□□□□ 0.42
CCDC28BQ9BUN5 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
CCDC28BQ9BUN5 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CCDC28BQ9BUN5 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC28BQ9BUN5 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC28BQ9BUN5 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.65■□□□□ 0.42
CCDC28BQ9BUN5 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC28BQ9BUN5 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC28BQ9BUN5 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC28BQ9BUN5 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
CCDC28BQ9BUN5 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC28BQ9BUN5 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC28BQ9BUN5 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC28BQ9BUN5 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC17.65■□□□□ 0.42
CCDC28BQ9BUN5 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CCDC28BQ9BUN5 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
CCDC28BQ9BUN5 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.42
CCDC28BQ9BUN5 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
CCDC28BQ9BUN5 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.64■□□□□ 0.41
CCDC28BQ9BUN5 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC28BQ9BUN5 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC17.64■□□□□ 0.41
CCDC28BQ9BUN5 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC28BQ9BUN5 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC28BQ9BUN5 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC28BQ9BUN5 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC28BQ9BUN5 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC28BQ9BUN5 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC28BQ9BUN5 CYP51A1P1-201ENST00000492267 1507 ntBASIC17.64■□□□□ 0.41
CCDC28BQ9BUN5 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC28BQ9BUN5 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC28BQ9BUN5 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC28BQ9BUN5 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.64■□□□□ 0.41
CCDC28BQ9BUN5 ISG20-202ENST00000379224 540 ntTSL 3 BASIC17.64■□□□□ 0.41
CCDC28BQ9BUN5 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC28BQ9BUN5 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC17.64■□□□□ 0.41
CCDC28BQ9BUN5 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC17.64■□□□□ 0.41
CCDC28BQ9BUN5 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC17.64■□□□□ 0.41
CCDC28BQ9BUN5 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC17.64■□□□□ 0.41
CCDC28BQ9BUN5 AP000692.2-201ENST00000608391 879 ntBASIC17.64■□□□□ 0.41
CCDC28BQ9BUN5 MIR6786-201ENST00000616843 113 ntBASIC17.64■□□□□ 0.41
CCDC28BQ9BUN5 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
CCDC28BQ9BUN5 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC17.64■□□□□ 0.41
CCDC28BQ9BUN5 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC28BQ9BUN5 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
CCDC28BQ9BUN5 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.64■□□□□ 0.41
CCDC28BQ9BUN5 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
CCDC28BQ9BUN5 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC28BQ9BUN5 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC28BQ9BUN5 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC28BQ9BUN5 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC17.64■□□□□ 0.41
CCDC28BQ9BUN5 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
CCDC28BQ9BUN5 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC28BQ9BUN5 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC28BQ9BUN5 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC28BQ9BUN5 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC28BQ9BUN5 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC28BQ9BUN5 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC28BQ9BUN5 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC17.63■□□□□ 0.41
CCDC28BQ9BUN5 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC28BQ9BUN5 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC28BQ9BUN5 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC28BQ9BUN5 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.63■□□□□ 0.41
CCDC28BQ9BUN5 NF2-208ENST00000403435 2568 ntTSL 5 BASIC17.63■□□□□ 0.41
CCDC28BQ9BUN5 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC28BQ9BUN5 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.63■□□□□ 0.41
CCDC28BQ9BUN5 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC17.63■□□□□ 0.41
CCDC28BQ9BUN5 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
CCDC28BQ9BUN5 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
CCDC28BQ9BUN5 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC28BQ9BUN5 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
CCDC28BQ9BUN5 B3GAT3P1-201ENST00000471720 806 ntBASIC17.63■□□□□ 0.41
CCDC28BQ9BUN5 RN7SL471P-201ENST00000580476 299 ntBASIC17.63■□□□□ 0.41
CCDC28BQ9BUN5 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.63■□□□□ 0.41
CCDC28BQ9BUN5 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC28BQ9BUN5 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
CCDC28BQ9BUN5 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC28BQ9BUN5 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC28BQ9BUN5 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC28BQ9BUN5 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC28BQ9BUN5 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC17.63■□□□□ 0.41
CCDC28BQ9BUN5 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC28BQ9BUN5 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC28BQ9BUN5 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC28BQ9BUN5 AC036111.1-201ENST00000533973 1582 ntBASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms