Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 PP7080-204ENST00000510714 601 ntTSL 3 BASIC17.49■□□□□ 0.39
CLIP3Q96DZ5 RNF126P1-202ENST00000569893 925 ntBASIC17.49■□□□□ 0.39
CLIP3Q96DZ5 MIR3652-201ENST00000579335 131 ntBASIC17.49■□□□□ 0.39
CLIP3Q96DZ5 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC17.49■□□□□ 0.39
CLIP3Q96DZ5 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
CLIP3Q96DZ5 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC17.49■□□□□ 0.39
CLIP3Q96DZ5 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP3Q96DZ5 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP3Q96DZ5 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP3Q96DZ5 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
CLIP3Q96DZ5 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC17.49■□□□□ 0.39
CLIP3Q96DZ5 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.49■□□□□ 0.39
CLIP3Q96DZ5 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.49■□□□□ 0.39
CLIP3Q96DZ5 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
CLIP3Q96DZ5 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP3Q96DZ5 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC17.49■□□□□ 0.39
CLIP3Q96DZ5 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CLIP3Q96DZ5 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.48■□□□□ 0.39
CLIP3Q96DZ5 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLIP3Q96DZ5 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CLIP3Q96DZ5 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLIP3Q96DZ5 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CLIP3Q96DZ5 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLIP3Q96DZ5 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CLIP3Q96DZ5 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLIP3Q96DZ5 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLIP3Q96DZ5 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC17.48■□□□□ 0.39
CLIP3Q96DZ5 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLIP3Q96DZ5 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLIP3Q96DZ5 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLIP3Q96DZ5 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CLIP3Q96DZ5 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC17.48■□□□□ 0.39
CLIP3Q96DZ5 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC17.48■□□□□ 0.39
CLIP3Q96DZ5 DUSP5P1-201ENST00000441325 1139 ntBASIC17.48■□□□□ 0.39
CLIP3Q96DZ5 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC17.48■□□□□ 0.39
CLIP3Q96DZ5 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
CLIP3Q96DZ5 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC17.48■□□□□ 0.39
CLIP3Q96DZ5 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CLIP3Q96DZ5 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLIP3Q96DZ5 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLIP3Q96DZ5 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLIP3Q96DZ5 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLIP3Q96DZ5 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CLIP3Q96DZ5 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.48■□□□□ 0.39
CLIP3Q96DZ5 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.48■□□□□ 0.39
CLIP3Q96DZ5 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLIP3Q96DZ5 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLIP3Q96DZ5 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC17.48■□□□□ 0.39
CLIP3Q96DZ5 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLIP3Q96DZ5 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 KRT18P1-202ENST00000452408 1331 ntBASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 KRT8P50-201ENST00000562022 1438 ntBASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 Z83836.1-201ENST00000624605 1642 ntBASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 BAALC-202ENST00000306391 243 ntTSL 5 BASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 BAALC-204ENST00000330955 222 ntTSL 5 BASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 AP000593.1-201ENST00000393668 712 ntBASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 AL450487.1-201ENST00000426799 995 ntBASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 PRELID1P1-202ENST00000567272 903 ntBASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 AP002414.4-201ENST00000589764 1148 ntBASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 IL11-204ENST00000590625 1028 ntTSL 2 BASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 AC083906.6-201ENST00000641366 219 ntBASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 UBC-206ENST00000538617 1303 ntTSL 5 BASIC17.47■□□□□ 0.39
CLIP3Q96DZ5 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLIP3Q96DZ5 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLIP3Q96DZ5 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC17.46■□□□□ 0.39
CLIP3Q96DZ5 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC17.46■□□□□ 0.39
CLIP3Q96DZ5 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLIP3Q96DZ5 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms