Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHROOM3Q8TF72 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
SHROOM3Q8TF72 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHROOM3Q8TF72 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC18.47■□□□□ 0.55
SHROOM3Q8TF72 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SHROOM3Q8TF72 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.47■□□□□ 0.55
SHROOM3Q8TF72 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
SHROOM3Q8TF72 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHROOM3Q8TF72 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.47■□□□□ 0.55
SHROOM3Q8TF72 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC18.47■□□□□ 0.55
SHROOM3Q8TF72 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC18.47■□□□□ 0.55
SHROOM3Q8TF72 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SHROOM3Q8TF72 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SHROOM3Q8TF72 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC18.47■□□□□ 0.55
SHROOM3Q8TF72 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHROOM3Q8TF72 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHROOM3Q8TF72 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC18.47■□□□□ 0.55
SHROOM3Q8TF72 CNP-204ENST00000472031 1019 ntTSL 2 BASIC18.47■□□□□ 0.55
SHROOM3Q8TF72 AC012313.10-201ENST00000623509 926 ntBASIC18.47■□□□□ 0.55
SHROOM3Q8TF72 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SHROOM3Q8TF72 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC18.47■□□□□ 0.55
SHROOM3Q8TF72 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHROOM3Q8TF72 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.47■□□□□ 0.55
SHROOM3Q8TF72 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC18.47■□□□□ 0.55
SHROOM3Q8TF72 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHROOM3Q8TF72 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHROOM3Q8TF72 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHROOM3Q8TF72 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SHROOM3Q8TF72 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
SHROOM3Q8TF72 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.55
SHROOM3Q8TF72 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SHROOM3Q8TF72 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SHROOM3Q8TF72 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC18.46■□□□□ 0.55
SHROOM3Q8TF72 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
SHROOM3Q8TF72 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SHROOM3Q8TF72 IRF5-214ENST00000613821 595 ntTSL 5 BASIC18.46■□□□□ 0.55
SHROOM3Q8TF72 AL121956.5-201ENST00000625261 221 ntBASIC18.46■□□□□ 0.55
SHROOM3Q8TF72 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SHROOM3Q8TF72 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
SHROOM3Q8TF72 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC18.46■□□□□ 0.55
SHROOM3Q8TF72 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SHROOM3Q8TF72 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SHROOM3Q8TF72 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
SHROOM3Q8TF72 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SHROOM3Q8TF72 FLJ13224-201ENST00000313737 1514 ntBASIC18.46■□□□□ 0.55
SHROOM3Q8TF72 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC18.46■□□□□ 0.55
SHROOM3Q8TF72 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SHROOM3Q8TF72 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SHROOM3Q8TF72 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SHROOM3Q8TF72 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
SHROOM3Q8TF72 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SHROOM3Q8TF72 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SHROOM3Q8TF72 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC18.46■□□□□ 0.55
SHROOM3Q8TF72 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SHROOM3Q8TF72 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC18.46■□□□□ 0.55
SHROOM3Q8TF72 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC18.46■□□□□ 0.55
SHROOM3Q8TF72 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC18.46■□□□□ 0.55
SHROOM3Q8TF72 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
SHROOM3Q8TF72 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC18.46■□□□□ 0.54
SHROOM3Q8TF72 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC18.45■□□□□ 0.54
SHROOM3Q8TF72 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.45■□□□□ 0.54
SHROOM3Q8TF72 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHROOM3Q8TF72 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SHROOM3Q8TF72 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
SHROOM3Q8TF72 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.45■□□□□ 0.54
SHROOM3Q8TF72 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHROOM3Q8TF72 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHROOM3Q8TF72 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC18.45■□□□□ 0.54
SHROOM3Q8TF72 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHROOM3Q8TF72 AC005336.2-201ENST00000593183 939 ntBASIC18.45■□□□□ 0.54
SHROOM3Q8TF72 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SHROOM3Q8TF72 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHROOM3Q8TF72 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
SHROOM3Q8TF72 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHROOM3Q8TF72 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHROOM3Q8TF72 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC18.45■□□□□ 0.54
SHROOM3Q8TF72 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHROOM3Q8TF72 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHROOM3Q8TF72 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHROOM3Q8TF72 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHROOM3Q8TF72 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHROOM3Q8TF72 AC067852.2-201ENST00000590513 2313 ntBASIC18.44■□□□□ 0.54
SHROOM3Q8TF72 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC18.44■□□□□ 0.54
SHROOM3Q8TF72 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.44■□□□□ 0.54
SHROOM3Q8TF72 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC18.44■□□□□ 0.54
SHROOM3Q8TF72 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHROOM3Q8TF72 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SHROOM3Q8TF72 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC18.44■□□□□ 0.54
SHROOM3Q8TF72 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SHROOM3Q8TF72 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.44■□□□□ 0.54
SHROOM3Q8TF72 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC18.44■□□□□ 0.54
SHROOM3Q8TF72 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SHROOM3Q8TF72 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
SHROOM3Q8TF72 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHROOM3Q8TF72 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHROOM3Q8TF72 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHROOM3Q8TF72 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
SHROOM3Q8TF72 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHROOM3Q8TF72 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHROOM3Q8TF72 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms